View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18373_low_4 (Length: 543)
Name: NF18373_low_4
Description: NF18373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18373_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 239 - 529
Target Start/End: Original strand, 35166843 - 35167133
Alignment:
| Q |
239 |
gtaaaatggcaatccttaaaataaccaaaaaacatcacaaacgtttcaacaatcctttcccttctgcaccaaccaccattcctaatgtccaaggctctct |
338 |
Q |
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| T |
35166843 |
gtaaaatggcaatccttaaaataaccaaaaaacatcacaaacgtttcaacaatcctttcccttctgcaccaaccaccattcctaatgtccaaggctctct |
35166942 |
T |
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| Q |
339 |
attcatcaattccaaagctttatcttcacaagatcaaactttttcaatcggcaatgattttcagctttcttggtccacactcaacggagggcagttttca |
438 |
Q |
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| T |
35166943 |
attcatcaattccaaagctttatcttcacaagatcaaactttttcaattggcaatgattttcagctttcttggtccacactcaacggagggcagttttca |
35167042 |
T |
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| Q |
439 |
atctcacacctttctcagaaaactagaccaatttggtctacaatctcaggaaaggcttttgtttcagctgcagtggttgatacagagattg |
529 |
Q |
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| T |
35167043 |
atctcacacctttctcagaaaactagaccaatttggtctacaatctcaggaaaggcttttgtttcagctgcagtggttgatgcagagattg |
35167133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 27 - 202
Target Start/End: Original strand, 35166631 - 35166806
Alignment:
| Q |
27 |
taccaatcaatattggtggctcggtccattttgtcctttacatgactcagattcataaaaatactcttcccacctctttcacatgcaacatgcaaagaaa |
126 |
Q |
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| T |
35166631 |
taccaatcaatattggtggctcggtccattttgtccattacatgactcagattcataaaaatactcttcctacctctttcatatgcaacatgcaaagaaa |
35166730 |
T |
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| Q |
127 |
cactatatagaagagggggaaaaaacatcataggaatctcaaaaacacacaaactagttcaaaccaaacattcccc |
202 |
Q |
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| T |
35166731 |
cactatatagaagagggggaaaaaacatcataggaatctcaaaaacacataaactagttcaaaccaaacattcccc |
35166806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 40 - 135
Target Start/End: Original strand, 14537628 - 14537723
Alignment:
| Q |
40 |
tggtggctcggtccattttgtcctttacatgactcagattcataaaaatactcttcccacctctttcacatgcaacatgcaaagaaacactatata |
135 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||| ||||| || ||||||||||||||| ||||||| |
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| T |
14537628 |
tggtggctcggtccattttgtcctttacatgatgcagattcataaaaatacttttcctacctttttcagatagaacatgcaaagaaactctatata |
14537723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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