View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18373_low_8 (Length: 252)

Name: NF18373_low_8
Description: NF18373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18373_low_8
NF18373_low_8
[»] chr5 (1 HSPs)
chr5 (18-252)||(36223459-36223694)
[»] chr3 (3 HSPs)
chr3 (122-252)||(39426662-39426791)
chr3 (145-251)||(39425994-39426101)
chr3 (18-80)||(39426810-39426872)
[»] chr2 (9 HSPs)
chr2 (18-252)||(9300677-9300887)
chr2 (127-252)||(9271485-9271599)
chr2 (18-78)||(9287503-9287563)
chr2 (18-80)||(10351093-10351159)
chr2 (18-69)||(9271648-9271699)
chr2 (115-174)||(9287420-9287479)
chr2 (18-69)||(10334631-10334682)
chr2 (18-80)||(10346623-10346688)
chr2 (212-252)||(9287354-9287393)
[»] chr6 (1 HSPs)
chr6 (18-80)||(10857046-10857108)
[»] chr7 (2 HSPs)
chr7 (179-231)||(45241561-45241614)
chr7 (18-104)||(45241666-45241752)


Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 252
Target Start/End: Complemental strand, 36223694 - 36223459
Alignment:
Q  18 caatttagatgtcaatattgaaaattgtcgatttagaaaatctgtgtttgtgaactctaaaataaggaacccatgcagacttagtaacgaactaacaatt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  36223694 caatttagatgtcaatattgaaaattgtcgatttagaaaatctgtgtttgtgaactctaaaataaggaaccaatgcagacttagtaacgaactaacaatt 36223595  T
Q  118 ttggtgtctagatgcagcaatctatttttggtttgctattttcatttatag-tatttgaagaaattaatattgcatgtttaaaggagtgactgtagtagg 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  36223594 ttggtgtctagatgcagcaatctatttttggtttgctattttcatttatagatatttgaagaaattaatattgcatgtttaaaggagtgactgtagtagg 36223495  T
Q  217 ttttaattctttcttagatcaatgatcattcaattc 252  Q
    ||||||||||||||||||||||||||||||||||||    
T  36223494 ttttaattctttcttagatcaatgatcattcaattc 36223459  T

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Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 122 - 252
Target Start/End: Complemental strand, 39426791 - 39426662
Alignment:
Q  122 tgtctagatgcagcaatctatttttggtttgctattttcatttatagtatttgaagaaattaatattgcatgtttaaaggagtgactgtagtaggtttta 221  Q
    ||||||||||||||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||  ||||||||||    
T  39426791 tgtctagatgcagcaatctatttttggttttttattttcatttttagtatttgaagaaattaatattgcatgtttaaaggagcgactgccgtaggtttta 39426692  T
Q  222 attctttcttagatcaatgatcattcaattc 252  Q
    |||| |||||| |||||||||||||||||||    
T  39426691 attc-ttcttaaatcaatgatcattcaattc 39426662  T

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Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 145 - 251
Target Start/End: Complemental strand, 39426101 - 39425994
Alignment:
Q  145 ttggtttgctattttcatttatagtatttgaagaaat-taatattgcatgtttaaaggagtgactgtagtaggttttaattctttcttagatcaatgatc 243  Q
    ||||||||||||||||  || |||||||||||||||| |||||||||| |||||||||||  ||||| |||||||||||||||||| |||||||||||||    
T  39426101 ttggtttgctattttcggttttagtatttgaagaaatctaatattgcaggtttaaaggagctactgttgtaggttttaattctttcgtagatcaatgatc 39426002  T
Q  244 attcaatt 251  Q
    ||||||||    
T  39426001 attcaatt 39425994  T

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Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 39426872 - 39426810
Alignment:
Q  18 caatttagatgtcaatattgaaaattgtcgatttagaaaatctgtgtttgtgaactctaaaat 80  Q
    ||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  39426872 caatttaaatgtcaatattgaaaatggtcgatctagaaaatctgtgtttgtgaactctaaaat 39426810  T

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Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 252
Target Start/End: Complemental strand, 9300887 - 9300677
Alignment:
Q  18 caatttagatgtcaatattgaaaattgtcgatttagaaaatctgtgtttgtgaactctaaaataaggaacccatgcagacttagtaacgaactaacaatt 117  Q
    ||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||| ||| |  |||     |||||||| |        |||    
T  9300887 caatttagatgtcaatattgaaaatggtcgatttaaaaaatttgtgtttgtgaactctaaaatgaggcaagcat-----cttagtaatg--------att 9300801  T
Q  118 ttggtgtctagatgcagcaatctatttttggtttgctattttcatttatagtatttgaagaaattaatattgcatgtttaaaggagtgactgtagtaggt 217  Q
    ||||| || |||||||||||||| |||||||||||||||||| || | ||||||||| |           ||||||||||||||| |  || | ||||||    
T  9300800 ttggtatccagatgcagcaatctctttttggtttgctattttgatatttagtatttgga-----------tgcatgtttaaaggaattcctattgtaggt 9300712  T
Q  218 tttaattctttcttagatcaatgatcattcaattc 252  Q
    ||||||||||||  |||||||||||||||||||||    
T  9300711 tttaattctttcacagatcaatgatcattcaattc 9300677  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 127 - 252
Target Start/End: Complemental strand, 9271599 - 9271485
Alignment:
Q  127 agatgcagcaatctatttttggtttgctattttcatttatagtatttgaagaaattaatattgcatgtttaaaggagtgactgtagtaggttttaattct 226  Q
    |||||||||||||| |||||||||| |||||||||||| ||||||||| |           |||| |||||||||| ||||| | |||||||||||||||    
T  9271599 agatgcagcaatctctttttggtttactattttcatttttagtatttgga-----------tgcacgtttaaaggaatgactattgtaggttttaattct 9271511  T
Q  227 ttcttagatcaatgatcattcaattc 252  Q
    || | | |||||||||||||||||||    
T  9271510 ttatcaaatcaatgatcattcaattc 9271485  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 9287563 - 9287503
Alignment:
Q  18 caatttagatgtcaatattgaaaattgtcgatttagaaaatctgtgtttgtgaactctaaa 78  Q
    ||||||||||||||| ||||||||| || |||||| || || |||||||||||||||||||    
T  9287563 caatttagatgtcaaaattgaaaatggttgatttaaaatatttgtgtttgtgaactctaaa 9287503  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 10351159 - 10351093
Alignment:
Q  18 caatttagatgtcaatattgaaaattgtcgatttagaaaa----tctgtgtttgtgaactctaaaat 80  Q
    |||| |||||||||||||||||||| ||||||||| ||||    | |||||||||||||||||||||    
T  10351159 caatgtagatgtcaatattgaaaatggtcgatttaaaaaatttgtatgtgtttgtgaactctaaaat 10351093  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 9271699 - 9271648
Alignment:
Q  18 caatttagatgtcaatattgaaaattgtcgatttagaaaatctgtgtttgtg 69  Q
    ||||||||||||||||||||||||| ||||||||| || || || |||||||    
T  9271699 caatttagatgtcaatattgaaaatggtcgatttaaaagatttgggtttgtg 9271648  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 174
Target Start/End: Complemental strand, 9287479 - 9287420
Alignment:
Q  115 attttggtgtctagatgcagcaatctatttttggtttgctattttcatttatagtatttg 174  Q
    |||||||| || || |||||| |||| ||||||||||||| ||||||||| |||||||||    
T  9287479 attttggtatccagttgcagctatctctttttggtttgctgttttcatttttagtatttg 9287420  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 10334682 - 10334631
Alignment:
Q  18 caatttagatgtcaatattgaaaattgtcgatttagaaaatctgtgtttgtg 69  Q
    |||| |||||||||||||||||||| ||||||||| ||||| ||| ||||||    
T  10334682 caatgtagatgtcaatattgaaaatggtcgatttaaaaaatttgtatttgtg 10334631  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 10346688 - 10346623
Alignment:
Q  18 caatttagatgtcaatattgaaaattgtcgatttagaaaa----tctgtgtttgtgaactctaaaat 80  Q
    |||||||||||||||||| |||||| |||||||| |||||    | |||||||||||||||||||||    
T  10346688 caatttagatgtcaatatcgaaaatggtcgattt-gaaaatttgtatgtgtttgtgaactctaaaat 10346623  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 9287393 - 9287354
Alignment:
Q  212 gtaggttttaattctttcttagatcaatgatcattcaattc 252  Q
    |||||||||||||||| || |||||||||||||||||||||    
T  9287393 gtaggttttaattctt-ctcagatcaatgatcattcaattc 9287354  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 10857046 - 10857108
Alignment:
Q  18 caatttagatgtcaatattgaaaattgtcgatttagaaaatctgtgtttgtgaactctaaaat 80  Q
    |||||||||||| |||||| || || ||||||||| ||||| |||||||||||||||||||||    
T  10857046 caatttagatgtaaatattcaatatggtcgatttaaaaaatttgtgtttgtgaactctaaaat 10857108  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 231
Target Start/End: Complemental strand, 45241614 - 45241561
Alignment:
Q  179 aattaatattgcatgtttaaaggagtgactg-tagtaggttttaattctttctt 231  Q
    |||||||||||||||||||||||| |||||| ||  ||||||||||||||||||    
T  45241614 aattaatattgcatgtttaaaggaatgactgttaaaaggttttaattctttctt 45241561  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 45241752 - 45241666
Alignment:
Q  18 caatttagatgtcaatattgaaaattgtcgatttagaaaatctgtgtttgtgaactctaaaataaggaacccatgcagacttagtaa 104  Q
    |||||||||||||||||||||| ||  | |||||| ||  | |||||||||||||| |||||| ||| |  |||| |||||||||||    
T  45241752 caatttagatgtcaatattgaagatgattgatttataacctttgtgtttgtgaactataaaatgaggcaagcatgtagacttagtaa 45241666  T

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