View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18374_high_12 (Length: 413)
Name: NF18374_high_12
Description: NF18374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18374_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 37108499 - 37108770
Alignment:
| Q |
1 |
cttttggtgaaccaccctttgctgttccattgccttgaccaaagacactgactccaggtacgaagtttccaccagccgttgataaagtatgggatccatg |
100 |
Q |
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| T |
37108499 |
cttttggtgaaccaccctttgctgttccatagccttgaccgaagacactgactccaggtaccatgtttccaccggctgttgataaagtatgagatccatg |
37108598 |
T |
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| Q |
101 |
gccgtcattgtcacgaggtgtctcaaaggatgagtttagtggaacagttagtctagaagcgacgcctttgttgaaataccttgctccaatcagtttcctg |
200 |
Q |
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| T |
37108599 |
accttcattgtcacgaggtgtttcaaaggaagaatttagtgggacagttagtctcgaagcatagcctttgttgaaataccttgctccaatcagtttcctg |
37108698 |
T |
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| Q |
201 |
ttttttccatgtacatatatattagtttgatttacacaagtttctgtttaaaacctcagagtaagtgatata |
272 |
Q |
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| T |
37108699 |
ttttttccatatacatatatattagtttgatttacacaagtttctgtttaaaacctcagagtaagtgatata |
37108770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 339 - 412
Target Start/End: Original strand, 37108837 - 37108909
Alignment:
| Q |
339 |
aacacaatactctaactcggaacattcttttaaattgaagtgaagatcatcggcacgtagacaaacaccgacaa |
412 |
Q |
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| T |
37108837 |
aacacaatactctaactcggaacattcttt-aaattgaagtgaagatcatcggcacgtagacaaacaccgacaa |
37108909 |
T |
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