View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18374_high_13 (Length: 402)
Name: NF18374_high_13
Description: NF18374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18374_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 3884362 - 3884733
Alignment:
| Q |
1 |
atcaagtttattaacttaaatacattgtactttgaaagcagacaataattagcttaaaacataaattcatcttaagttcaagattcaacacttagtttta |
100 |
Q |
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| T |
3884362 |
atcaagtttattaacttaaatacattgtactttgagcgcagacaataattagcttaaaacataaattcatcttaagttcaagattcaacacttagtttta |
3884461 |
T |
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| Q |
101 |
tcacaaaccttccttgagcatgcatgcaaggttcttacattacaacagagatgctttacacttcaaaacaagaaagagaagaataagaatgaaaacaata |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3884462 |
tcataaaccttccttgagcatgcatgcaaggttcttacattacaacagagatgctttacacttcaaaacaagaaagagaagaataagaatgaaaacaata |
3884561 |
T |
|
| Q |
201 |
ccaccagaagaaccaccaactctatgaatccaattacgatcaaaccttgtgaagctcttatccnnnnnnnctgataaagatatgactaaaaccaatacaa |
300 |
Q |
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| T |
3884562 |
ccaccagaagaa-caccaactctatgaatccaattacgatcaaaccttgtgaagctcttatctaaaaaagctgataaagatatgactaaaaccaatacaa |
3884660 |
T |
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| Q |
301 |
aaagcaacattggtaaccataaagtaacactaattggttgttcatcatcttccaattcactctctgatctgtg |
373 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
3884661 |
aaagcaacattggtaaccataaagtaacactaataggttgttcatcatcttccaattcactctctgatctgtg |
3884733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 122 - 373
Target Start/End: Original strand, 3873957 - 3874205
Alignment:
| Q |
122 |
gcatgcaaggttcttacattacaacagagatgctttacacttcaaaacaagaaagagaagaataagaatgaaaacaataccaccagaagaaccaccaact |
221 |
Q |
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| T |
3873957 |
gcatgcaaggttcttacattacaa---agatgctttacacttcaaaacaagaaagagaagaataagaatgaaaacaataccaccagaagaaccaccaact |
3874053 |
T |
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| Q |
222 |
ctatgaatccaattacgatcaaaccttgtgaagctcttatccnnnnnnnctgataaagatatgactaaaaccaatacaaaaagcaacattggtaaccata |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
3874054 |
ctatgaatccaattacgatcaaaccttgtgaagctcttatccaaaaaagctgataaagatatgactaaaaccaatacaaaaagtaacattggtaaccata |
3874153 |
T |
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| Q |
322 |
aagtaacactaattggttgttcatcatcttccaattcactctctgatctgtg |
373 |
Q |
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| T |
3874154 |
aagtaacactaattggttgttcatcatcttccaactcactctctgatctgtg |
3874205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 245
Target Start/End: Original strand, 48453465 - 48453561
Alignment:
| Q |
149 |
agatgctttacacttcaaaacaagaaagagaagaataagaatgaaaacaataccaccagaagaaccaccaactctatgaatccaattacgatcaaac |
245 |
Q |
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||||| ||| |||||||||| |||||| |||| | ||| ||| | || |||||| || || || |||| ||||||||||||||| | |||||||||| |
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| T |
48453465 |
agatgatttccacttcaaaataagaaaaagaacagtaataatcacaaaaataccgcctgaggagccacaaactctatgaatccagtaacgatcaaac |
48453561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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