View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18374_high_15 (Length: 391)
Name: NF18374_high_15
Description: NF18374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18374_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 17 - 381
Target Start/End: Original strand, 10334359 - 10334722
Alignment:
| Q |
17 |
acaattatgccaaaagttttgccatttttagctattgtaaaataaacaaattgatcctctatatgtggcaacaatagcaggattaatatcatttgcacaa |
116 |
Q |
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| T |
10334359 |
acaattatgccaaaagttttgccatttttagctattgtaaaataaacaaattgatcctctatctgtggcaacgatagcaggattaatatcatttgcacaa |
10334458 |
T |
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| Q |
117 |
agacgccataaatttggcagcaaattcactctcttattcaaaggtaaacaatttgaaagctattctacttaaccaatttctataagtttctgctattctg |
216 |
Q |
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| T |
10334459 |
agacgccataaatttagcagcaaattcactctcttattcaa-ggtaaacaatttgaaagctattctactcaaccaatttctataagtttctgctattcta |
10334557 |
T |
|
| Q |
217 |
taaaaattcatccatgtttctgcatttaagcatgtatcgcgattatactcatctacaagtctcttgagagccaatcttgacggggcattgaccaagcccc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10334558 |
taaaaattcatccatgtttctgcatttaagcatgtatcgcgattatactcatctacaagtctcttgagagccaatcttgacggggcattgaccaagcccc |
10334657 |
T |
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| Q |
317 |
gcacatcccaaaataggcacttcatctaaaaggtttaacattaataacctttgtcattgtttcat |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
10334658 |
gcacatcccaaaataggcacttcatctaaaaggtttaacattaataacctttgttattgtttcat |
10334722 |
T |
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