View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18374_high_16 (Length: 378)
Name: NF18374_high_16
Description: NF18374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18374_high_16 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 5 - 360
Target Start/End: Complemental strand, 36599546 - 36599207
Alignment:
| Q |
5 |
ggtagattatactttgccactctctcatttagtcctttgagaggtagttattgtcataactgtggaatgtaactttactcatctttcttgtgaaaaccat |
104 |
Q |
| |
|
|||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36599546 |
ggtatattatactttgcccctctctcatttaatcctttgagaggtagttattgtcataactgtggaatgtaactttactcatctttcttgtgaaaaccat |
36599447 |
T |
|
| Q |
105 |
tcaattcaatgttcctatagcaaactcctcaaacctcattctcttagaaatatatttattttttcccaattaattaatgctcataagtttataacagtac |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
36599446 |
tcaattcaatgttcctatagcaaactcctcaaacctcattctctta------------ttttttcccaattaat----gctcataagtttataacagtac |
36599363 |
T |
|
| Q |
205 |
acttcaattacatcatatcatatagatgaaaaacttgggtagaaagggttggtattggtaatcaaattcacacacactcactcacatactttaccataaa |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36599362 |
acttcaattacatcatatcatatagatgaaaaacttgggtagaaagggttggtattggtaatcaaattcacacacactcactcacatactttaccataaa |
36599263 |
T |
|
| Q |
305 |
ttaacatttttactttttctccctttgatttcctgaattgggtttgtagctaatta |
360 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36599262 |
ataacattttttctttttctccctttgatttcctgaattgggtttgtagctaatta |
36599207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University