View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18374_high_17 (Length: 361)
Name: NF18374_high_17
Description: NF18374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18374_high_17 |
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| [»] scaffold0167 (2 HSPs) |
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Alignment Details
Target: scaffold0167 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: scaffold0167
Description:
Target: scaffold0167; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 17298 - 17121
Alignment:
| Q |
1 |
atagcttatgaaaacaacttatagattgtattaaaagccttttgattttgttatagaaataagcacttaaagcgcttaattaagctatgtatgcaaacat |
100 |
Q |
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| T |
17298 |
atagcttatgaaaacaacttatagattgtattaaaagccttttgattttgttatagaaataagcacttaaagtgcttaattaagctatgtatgcaaacat |
17199 |
T |
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| Q |
101 |
atcctaagagtctgaatcaaatttagctcaataaataaataatcgcctactacctttatcagatttatctctggaatg |
178 |
Q |
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| T |
17198 |
atcctaagagtctgaatcaaatttagctcaataaataaataatcgcctactacctttatcagatttatctctggaatg |
17121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0167; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 260 - 346
Target Start/End: Complemental strand, 17039 - 16953
Alignment:
| Q |
260 |
gcttttcttctcatctgtcactcaatttaacactactattatcaatctatactaatatcaacaatagaacatagaaaaatcaaatat |
346 |
Q |
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| T |
17039 |
gcttttcttctcatctgtcactcaatttaacactactattaacaatctatactaatatcaacaatagaacttagaaaaatcaaatat |
16953 |
T |
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