View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18374_high_18 (Length: 346)
Name: NF18374_high_18
Description: NF18374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18374_high_18 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 18 - 337
Target Start/End: Original strand, 38950110 - 38950430
Alignment:
| Q |
18 |
attttattgagttagctattactttccaacatttccagtaatgttgaacttaaattaaaagaaa-taacaaatttaccctgtggagagttccatgttcag |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
38950110 |
attttattgagttagctattactttccaacatttccagtaatgttgaactcaaattaaaagaaaataacaaatttaccctgtggagagttccatgttcag |
38950209 |
T |
|
| Q |
117 |
cactgagtctgagccaccttagagctgggaggtcaaagctggtgacagttttgattctaccagcttcagggttgtagatgtcaggtgatgaagatgagcc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38950210 |
cactgagtctgagccaccttagagctgggaggtcaaagctggtgacagttttgattctaccagcttcagggttgtagatgtcaggtgatgaagatgagcc |
38950309 |
T |
|
| Q |
217 |
aatgttctggcgaagtctagcggtgcaaattgtttcctcaagaccgttgcttctttcacatttttggcctcggcggcaggggcgctcttcctcttcccct |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38950310 |
aatgttctggcgaagtctagcggtgcaaattgtttcctcaagaccgttgcttctttcacatttttggcctcggcggcaggggcgctcttcctcttcccct |
38950409 |
T |
|
| Q |
317 |
cttctgcttttctgatgatgt |
337 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
38950410 |
cttctgcttttctgatgatgt |
38950430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 95 - 265
Target Start/End: Original strand, 38942752 - 38942922
Alignment:
| Q |
95 |
ctgtggagagttccatgttcagcactgagtctgagccaccttagagctgggaggtcaaagctggtgacagttttgattctaccagcttcagggttgtaga |
194 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||||| |||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
38942752 |
ctgtggagagttccatgctcagcactgagtcttagccacctgagagctgggaggtcgaagctggtgatagttttgattctaccagcttgagggttgtaga |
38942851 |
T |
|
| Q |
195 |
tgtcaggtgatgaagatgagccaatgttctggcgaagtctagcggtgcaaattgtttcctcaagaccgttg |
265 |
Q |
| |
|
|||||||||||||||||||| | ||||||||| |||| || || ||||||||||||||| ||||||||||| |
|
|
| T |
38942852 |
tgtcaggtgatgaagatgagaccatgttctggtgaagcctggcagtgcaaattgtttccgcaagaccgttg |
38942922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University