View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18374_high_20 (Length: 324)
Name: NF18374_high_20
Description: NF18374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18374_high_20 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 16 - 324
Target Start/End: Complemental strand, 49918276 - 49917963
Alignment:
| Q |
16 |
ctaagacataaccaaa-tactaattaaatacttcaaaaatttaaaaagataaatagnnnnnnnnnn----aacatgtgttacgctcactctatnnnnnnn |
110 |
Q |
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| T |
49918276 |
ctaagacataaccaaaatattaattaaatacttcaaaaatttaaaaagataaatagttttttttttttttaacatgtgttacgctcactctataaaaaaa |
49918177 |
T |
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| Q |
111 |
gaaacataccccatctgttgctaagatgataaattgatccccagtggtaagttttctatgtgtcacatctggcactgagattagaccatagtccttcata |
210 |
Q |
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| T |
49918176 |
gaaacataccccatctgttgctaagatgataaattgatccccagtggtaagttttctatgtgtcacatctggcactgagattagaccatagtccttcata |
49918077 |
T |
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| Q |
211 |
caatagtcaccaaaggctctagatattgctaatcctggtgttttaccatttggcatccacaccctatacactcctggttcatctttcatacaaaatacac |
310 |
Q |
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| T |
49918076 |
caatagtcaccaaaggctctagatattgctaatcctggtgttttaccatttggcatccacaccctatacactcctggttcatctttcatacaaaatacac |
49917977 |
T |
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| Q |
311 |
gtccctttgcttct |
324 |
Q |
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|||| |||| |||| |
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| T |
49917976 |
gtccttttgattct |
49917963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 99; Significance: 7e-49; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 115 - 305
Target Start/End: Original strand, 13734418 - 13734608
Alignment:
| Q |
115 |
cataccccatctgttgctaagatgataaattgatccccagtggtaagttttctatgtgtcacatctggcactgagattagaccatagtccttcatacaat |
214 |
Q |
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| T |
13734418 |
cataccccatctgttgctaagatgacaaattgatccatagtagtgagttttctttgtgtcacatctggtactgagattagtccaaagtcttttacacaat |
13734517 |
T |
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| Q |
215 |
agtcaccaaaggctctagatattgctaatcctggtgttttaccatttggcatccacaccctatacactcctggttcatctttcatacaaaa |
305 |
Q |
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| T |
13734518 |
aatcaccaaatgctcttgatattgctagtcctggactcttaccatttggcatccaaactctatatactcctggttcatcttccatacaaaa |
13734608 |
T |
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