View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18374_high_22 (Length: 318)
Name: NF18374_high_22
Description: NF18374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18374_high_22 |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 29206391 - 29206672
Alignment:
| Q |
1 |
aactgttctgtttgatctgcaactcaaattttttctctattaagatctttttatagttaatgaaaatattatac--aaattattatgttagtaaatgcan |
98 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
29206391 |
aactgttctgtttgatctgcaactcaaattttttctctattaagatctttttatagttaatgaaaatattatatgaaaattattatgttagtaaatgcat |
29206490 |
T |
|
| Q |
99 |
nnnnnnnactcaattagttagtaaaccggnnnnnnnn---ttagacattgattatcattagaccggctttgccaaatgtagtgcaattctacagatatga |
195 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29206491 |
tttttt-actcaattagttagtaaaccggaaaaaaaaaaattagacattgattatcattagaccggctttgccaaatgtagtgcaattctacagatatga |
29206589 |
T |
|
| Q |
196 |
aattttgtttcaaagagtttagcgaccatactccctgtataaaagatttccaatgtgcttgcacacatacgcgcgcgcgcaca |
278 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
29206590 |
aattttgtttcaaagagtttagcgactatactccctgcataaaagatttccaatgtgcttgcacacatacacgcgcgcacaca |
29206672 |
T |
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