View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18374_high_27 (Length: 288)
Name: NF18374_high_27
Description: NF18374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18374_high_27 |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 13 - 270
Target Start/End: Complemental strand, 10066002 - 10065745
Alignment:
| Q |
13 |
atgaacaatacaaatggcaagaaaatcgaggcgttgaagaagagaaactaatttgcaacctccctaaagatctgagaagagacataaggagacatctttg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10066002 |
atgaacaatacaaatggcaagaaaatcgaggcgttgaagaagagaaactaatttgcaacctccctaaagatctgagaagagacataaggagacatctttg |
10065903 |
T |
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| Q |
113 |
cttagatttacttaaaaaagtgtgtaacatacagagtaatctcatctttcacttgattttttctttgactacttaactatacttgtttacatgtgatgat |
212 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
10065902 |
cttagatttacttaaaaaagtgtgtatcatacagagtaatctcatctttcacttgattttttctttaactacttaactatacttgtttacatgtgatgat |
10065803 |
T |
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| Q |
213 |
aggtgccaattttcggcaacatggataaacagttgttggatgcaatgtgtgataaact |
270 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10065802 |
aggtgccaattttcagcaacatggataaacagttgttggatgcaatgtgtgataaact |
10065745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 13 - 134
Target Start/End: Original strand, 48465866 - 48465987
Alignment:
| Q |
13 |
atgaacaatacaaatggcaagaaaatcgaggcgttgaagaagagaaactaatttgcaacctccctaaagatctgagaagagacataaggagacatctttg |
112 |
Q |
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|||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||||||| ||||||||||||| | | |||||||| |
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| T |
48465866 |
atgaacaatacaaatggcaagaaaatagaggtgttgaagaagagactttaattcacaacctccctaaagatctcagaagagacataaagcgtcatctttg |
48465965 |
T |
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| Q |
113 |
cttagatttacttaaaaaagtg |
134 |
Q |
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||||| |||| | ||||||||| |
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| T |
48465966 |
cttagctttagtaaaaaaagtg |
48465987 |
T |
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