View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18374_high_29 (Length: 276)

Name: NF18374_high_29
Description: NF18374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18374_high_29
NF18374_high_29
[»] chr4 (1 HSPs)
chr4 (11-257)||(48904788-48905034)
[»] chr8 (10 HSPs)
chr8 (7-257)||(10769422-10769668)
chr8 (14-236)||(2029782-2030001)
chr8 (14-246)||(2051915-2052144)
chr8 (14-257)||(1948012-1948251)
chr8 (11-150)||(2034697-2034836)
chr8 (14-150)||(2058976-2059112)
chr8 (11-167)||(2048018-2048174)
chr8 (11-154)||(2038775-2038918)
chr8 (14-246)||(2055772-2056004)
chr8 (11-65)||(2030874-2030928)
[»] chr2 (3 HSPs)
chr2 (98-149)||(28782875-28782926)
chr2 (95-153)||(28734918-28734976)
chr2 (91-153)||(28742051-28742113)
[»] chr1 (1 HSPs)
chr1 (107-150)||(16441760-16441803)


Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 11 - 257
Target Start/End: Complemental strand, 48905034 - 48904788
Alignment:
Q  11 cacagagtagttgcaaatcaagttggtccaagaatatctgctgcatgctttttctacaatggtcataaattatcctcaaggctctatggacctataaagg 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48905034 cacagagtagttgcaaatcaagttggtccaagaatatctgctgcatgctttttctacaatggtcataaattatcctcaaggctctatggacctataaagg 48904935  T
Q  111 aactattatctgaagacaatcctcccaaatacagagaaaccacaattggagactatgcagtctactctccagcagcaaaaagactaggttgtacttctgt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48904934 aactattatctgaagacaatcctcccaaatacagagaaaccacaattggagactatgcagtctactctccagcagcaaaaagactaggttgtacttctgt 48904835  T
Q  211 tctttcacattacaaaatttgaactaagcaatgtggagagaaaaaat 257  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||    
T  48904834 tctttcacattacaaaatttgaactaagcaatgtggagggaaaaaat 48904788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 109; Significance: 7e-55; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 7 - 257
Target Start/End: Original strand, 10769422 - 10769668
Alignment:
Q  7 ggagcacagagtagttgcaaatcaagttggtccaagaatatctgctgcatgctttttctacaatggtcataaattatcctcaaggctctatggacctata 106  Q
    ||||||||||||  |||||||| | ||||||||||||||||||| |||||| ||||||| ||  |||||||  | |||||||| ||||||||||||||||    
T  10769422 ggagcacagagttcttgcaaataatgttggtccaagaatatctgttgcatgttttttctgcaccggtcataggtcatcctcaaagctctatggacctata 10769521  T
Q  107 aaggaactattatctgaagacaatcctcccaaatacagagaaaccacaattggagactatgcagtctactctccagcagcaaaaagactaggttgtactt 206  Q
    |||||||||||||| |||||||||||||||| ||||||||||||| || |||  ||||||| || ||| | |   | ||||||| |||||| | ||||||    
T  10769522 aaggaactattatcagaagacaatcctcccatatacagagaaacctcagttgctgactatgtagcctatttt---gaagcaaaaggactagatggtactt 10769618  T
Q  207 ctgttctttcacattacaaaatttgaactaagcaatgtggagagaaaaaat 257  Q
    ||| |||| |||||||||| ||||||||||||||||||||| |||||||||    
T  10769619 ctgctcttacacattacaagatttgaactaagcaatgtgga-agaaaaaat 10769668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 14 - 236
Target Start/End: Original strand, 2029782 - 2030001
Alignment:
Q  14 agagtagttgcaaatcaagttggtccaagaatatctgctgcatgctttttctacaatggtcataaattatcctcaaggctctatggacctataaaggaac 113  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||  || | ||    ||| |||| ||||||||||||||| |||||||    
T  2029782 agagtagttgcaaatcaagttggtccaagaatatctgttgcatgctttttctccacaggccttaggccatcgtcaaagctctatggacctatgaaggaac 2029881  T
Q  114 tattatctgaagacaatcctcccaaatacagagaaaccacaattggagactatgcagtctactctccagcagcaaaaagactaggttgtacttctgttct 213  Q
    ||||||| ||| ||||||||||||||||||||||||||||| |||  || | ||||| ||||| |      |||||| |||||| | ||||||||| |||    
T  2029882 tattatcagaaaacaatcctcccaaatacagagaaaccacagttgctgattttgcagcctacttt---aatgcaaaaggactagatggtacttctgctct 2029978  T
Q  214 ttcacattacaaaatttgaacta 236  Q
    | |||||||||| ||||||||||    
T  2029979 tacacattacaagatttgaacta 2030001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 14 - 246
Target Start/End: Original strand, 2051915 - 2052144
Alignment:
Q  14 agagtagttgcaaatcaagttggtccaagaatatctgctgcatgctttttctacaatggtcataaattatcctcaaggctctatggacctataaaggaac 113  Q
    |||||| |||||||||||||||||||||||||||| | |||||||||||||| ||  |  | ||||  ||| |||| ||||||||||||||| |||||||    
T  2051915 agagtacttgcaaatcaagttggtccaagaatatccgttgcatgctttttctccacagcacttaaagcatcttcaaagctctatggacctatgaaggaac 2052014  T
Q  114 tattatctgaagacaatcctcccaaatacagagaaaccacaattggagactatgcagtctactctccagcagcaaaaagactaggttgtacttctgttct 213  Q
    |  |||| |||||||||||||||||||||||||||||  |  |||  || |||| || ||||| ||    ||||||| |||||| | ||||||||| |||    
T  2052015 tgctatcagaagacaatcctcccaaatacagagaaacttctgttgctgattatgtagcctactttc---gagcaaaaggactagatggtacttctgctct 2052111  T
Q  214 ttcacattacaaaatttgaactaagcaatgtgg 246  Q
    | |||||||||| ||||||||||||||||||||    
T  2052112 tacacattacaagatttgaactaagcaatgtgg 2052144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 14 - 257
Target Start/End: Complemental strand, 1948251 - 1948012
Alignment:
Q  14 agagtagttgcaaatcaagttggtccaagaatatctgctgcatgctttttctacaatggtcataaattatcctcaaggctctatggacctataaaggaac 113  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| |  |  |||| ||    ||| |||| ||||||||||||||| |||||||    
T  1948251 agagtagttgcaaatcaagttggtccaagaatatctgttgcatgctttttttcaacaggtcttaggccatcgtcaaagctctatggacctatgaaggaac 1948152  T
Q  114 tattatctgaagacaatcctcccaaatacagagaaaccacaattggagactatgcagtctactctccagcagcaaaaagactaggttgtacttctgttct 213  Q
    ||||||| ||| | |||||| ||||||| |||||||||||| |||  || ||||||| ||||| |     ||||||| |||||| | ||||||||| |||    
T  1948151 tattatcagaaaagaatccttccaaatatagagaaaccacagttgctgattatgcagcctacttt---aaagcaaaaggactagatggtacttctgctct 1948055  T
Q  214 ttcacattacaaaatttgaactaagcaatgtggagagaaaaaat 257  Q
    | |||||||||| |||||||||| ||| |||||| |||||||||    
T  1948054 tacacattacaagatttgaactaggcagtgtgga-agaaaaaat 1948012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 11 - 150
Target Start/End: Original strand, 2034697 - 2034836
Alignment:
Q  11 cacagagtagttgcaaatcaagttggtccaagaatatctgctgcatgctttttctacaatggtcataaattatcctcaaggctctatggacctataaagg 110  Q
    |||||||||||||||||| ||||||| |||||||||||||  ||||||||||||| ||  |||  ||  | |||||||| ||||||||||||||||||||    
T  2034697 cacagagtagttgcaaatgaagttggcccaagaatatctgtggcatgctttttctgcacaggtattaggtcatcctcaaagctctatggacctataaagg 2034796  T
Q  111 aactattatctgaagacaatcctcccaaatacagagaaac 150  Q
    |||||||||| |||||||||||||| ||||||||||||||    
T  2034797 aactattatcagaagacaatcctcctaaatacagagaaac 2034836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 14 - 150
Target Start/End: Original strand, 2058976 - 2059112
Alignment:
Q  14 agagtagttgcaaatcaagttggtccaagaatatctgctgcatgctttttctacaatggtcataaattatcctcaaggctctatggacctataaaggaac 113  Q
    |||||| |||| ||||||||||||||||||||||||| |||||||||||||| ||  || |  |||  ||| ||||  ||||||||||| || |||||||    
T  2058976 agagtaattgccaatcaagttggtccaagaatatctgttgcatgctttttctccacaggactcaaagcatcttcaaaactctatggaccaatgaaggaac 2059075  T
Q  114 tattatctgaagacaatcctcccaaatacagagaaac 150  Q
    ||||||| |||||||||||||||||||||||||||||    
T  2059076 tattatcagaagacaatcctcccaaatacagagaaac 2059112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 11 - 167
Target Start/End: Original strand, 2048018 - 2048174
Alignment:
Q  11 cacagagtagttgcaaatcaagttggtccaagaatatctgctgcatgctttttctacaatggtcataaattatcctcaaggctctatggacctataaagg 110  Q
    |||| |||| |||||||| || ||||||||||||||||||  ||| |||||||||  |  ||| |||  | ||| |||| ||||||||||||||| || |    
T  2048018 cacaaagtacttgcaaataaaattggtccaagaatatctgtagcaagctttttctctacaggtaataggtcatcttcaaagctctatggacctatgaaag 2048117  T
Q  111 aactattatctgaagacaatcctcccaaatacagagaaaccacaattggagactatg 167  Q
    |||||||||| |||||||||||||| |||||||||||||||||| ||| ||||||||    
T  2048118 aactattatcagaagacaatcctcctaaatacagagaaaccacagttgcagactatg 2048174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 11 - 154
Target Start/End: Original strand, 2038775 - 2038918
Alignment:
Q  11 cacagagtagttgcaaatcaagttggtccaagaatatctgctgcatgctttttctacaatggtcataaattatcctcaaggctctatggacctataaagg 110  Q
    ||||||||| |||| ||| || |||||||  |||||||||  ||||||||||||| ||  ||||||   | |||||||| |||||||||||| |||||||    
T  2038775 cacagagtacttgcgaataaaattggtccgcgaatatctgtagcatgctttttctccacaggtcattggtcatcctcaaagctctatggaccaataaagg 2038874  T
Q  111 aactattatctgaagacaatcctcccaaatacagagaaaccaca 154  Q
    | |||||||| |||||||||||||| ||||||||||||||||||    
T  2038875 atctattatcagaagacaatcctcctaaatacagagaaaccaca 2038918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 246
Target Start/End: Original strand, 2055772 - 2056004
Alignment:
Q  14 agagtagttgcaaatcaagttggtccaagaatatctgctgcatgctttttctacaatggtcataaattatcctcaaggctctatggacctataaaggaac 113  Q
    |||||| |||| |||  |||||||||||||||||||| ||||||||||||||  |  || | ||||  |||||||| |||||||||||| || |||||||    
T  2055772 agagtacttgccaatacagttggtccaagaatatctgttgcatgctttttctcgacgggacttaaagcatcctcaaagctctatggaccaatgaaggaac 2055871  T
Q  114 tattatctgaagacaatcctcccaaatacagagaaaccacaattggagactatgcagtctact-ctccagcagcaaaaagactaggttgtacttctgttc 212  Q
    | ||||| |||||||||||||| ||||||| |||||| ||  |||  || |||| || ||||| ||   | ||||||| || ||| | |||||||||  |    
T  2055872 tgttatcagaagacaatcctcctaaatacaaagaaactactgttgctgattatgtagcctactactttcg-agcaaaaggagtagatggtacttctgcac 2055970  T
Q  213 tttcacattacaaaatttgaactaagcaatgtgg 246  Q
    ||  ||||||||||||||||||| ||||||||||    
T  2055971 ttgaacattacaaaatttgaactgagcaatgtgg 2056004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 2030874 - 2030928
Alignment:
Q  11 cacagagtagttgcaaatcaagttggtccaagaatatctgctgcatgctttttct 65  Q
    |||| |||||||||||||||| |||||  ||||||||||| ||||||||||||||    
T  2030874 cacatagtagttgcaaatcaaattggtgtaagaatatctgttgcatgctttttct 2030928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 149
Target Start/End: Complemental strand, 28782926 - 28782875
Alignment:
Q  98 ggacctataaaggaactattatctgaagacaatcctcccaaatacagagaaa 149  Q
    ||||||||||| ||| | ||||| |||||||||||||||||||||| |||||    
T  28782926 ggacctataaaagaatttttatcagaagacaatcctcccaaatacaaagaaa 28782875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 153
Target Start/End: Complemental strand, 28734976 - 28734918
Alignment:
Q  95 tatggacctataaaggaactattatctgaagacaatcctcccaaatacagagaaaccac 153  Q
    |||||||||||||  ||| ||||||| |||||||| ||||||| ||| |||||||||||    
T  28734976 tatggacctataacagaattattatcagaagacaaccctcccagatatagagaaaccac 28734918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 153
Target Start/End: Complemental strand, 28742113 - 28742051
Alignment:
Q  91 gctctatggacctataaaggaactattatctgaagacaatcctcccaaatacagagaaaccac 153  Q
    |||||||||||||||||| ||| | ||||| |||||||| ||||| | ||| |||||||||||    
T  28742113 gctctatggacctataaaagaaattttatcagaagacaaccctccaagatatagagaaaccac 28742051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 150
Target Start/End: Complemental strand, 16441803 - 16441760
Alignment:
Q  107 aaggaactattatctgaagacaatcctcccaaatacagagaaac 150  Q
    ||||||||||||||||||||||||||| | ||||| ||||||||    
T  16441803 aaggaactattatctgaagacaatcctgcaaaatatagagaaac 16441760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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