View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18374_high_41 (Length: 217)
Name: NF18374_high_41
Description: NF18374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18374_high_41 |
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| [»] chr4 (2 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 119; Significance: 6e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 79 - 217
Target Start/End: Original strand, 47285327 - 47285465
Alignment:
| Q |
79 |
gggaagcaacatgaagctaagttctcaaataaacattacaaattgagcatgcataatatatattaattatcagtaaactcatgtttaacttttaccccac |
178 |
Q |
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| T |
47285327 |
gggaagcaacatgaagctaagctctcaaataaacattacaaattgagcatgcataatatatattaattatcaacaaactcatgtttaacttttaccccac |
47285426 |
T |
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| Q |
179 |
ttagaggaggagcagaggcgctcatattttgagtatcat |
217 |
Q |
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| T |
47285427 |
ttagaggaggagcacaggcgcttatattttgagtatcat |
47285465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 93 - 206
Target Start/End: Original strand, 47306901 - 47307014
Alignment:
| Q |
93 |
agctaagttctcaaataaacattacaaattgagcatgcataatatatattaattatcagtaaactcatgtttaacttttaccccacttagaggaggagca |
192 |
Q |
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| T |
47306901 |
agctaagctctcaaataaacattataaattgagcaagcataatataaattagttatcagcaggctccaatttaactttgaccccacttagaggaggagca |
47307000 |
T |
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| Q |
193 |
gaggcgctcatatt |
206 |
Q |
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| T |
47307001 |
ggcgcactcatatt |
47307014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 105 - 217
Target Start/End: Complemental strand, 22222806 - 22222694
Alignment:
| Q |
105 |
aaataaacattacaaattgagcatgcataatatatattaattatcagtaaactcatgtttaacttttaccccacttagaggaggagcagaggcgctcata |
204 |
Q |
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| T |
22222806 |
aaataaatattacaaattgaacttgcataatatattttaattatcagcaagctccaatttgacttttacttcgcttacaagaggagcagaggaactcata |
22222707 |
T |
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| Q |
205 |
ttttgagtatcat |
217 |
Q |
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| T |
22222706 |
ttttgattatcat |
22222694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 148
Target Start/End: Original strand, 22222132 - 22222175
Alignment:
| Q |
105 |
aaataaacattacaaattgagcatgcataatatatattaattat |
148 |
Q |
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| T |
22222132 |
aaataaatattacaaattgagcatgcataatatattttaattat |
22222175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 105 - 152
Target Start/End: Original strand, 10299462 - 10299509
Alignment:
| Q |
105 |
aaataaacattacaaattgagcatgcataatatatattaattatcagt |
152 |
Q |
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| T |
10299462 |
aaataaatattacaaattgagcatgcataatatattttaattatcagt |
10299509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 148
Target Start/End: Original strand, 2589401 - 2589444
Alignment:
| Q |
105 |
aaataaacattacaaattgagcatgcataatatatattaattat |
148 |
Q |
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| T |
2589401 |
aaataaatattacaaattgagcatgcataatatattttaattat |
2589444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 217
Target Start/End: Complemental strand, 10300133 - 10300021
Alignment:
| Q |
105 |
aaataaacattacaaattgagcatgcataatatatattaattatcagtaaactcatgtttaacttttaccccacttagaggaggagcagaggcgctcata |
204 |
Q |
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||||||| |||| ||||||| | |||||||||||| ||||||||||| || || |||||||||||| | |||| | ||| || || ||| |||||| |
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| T |
10300133 |
aaataaatattataaattgaacttgcataatatattttaattatcagcaagctttaatttaacttttacttcgcttacaagagaagtaggggcactcata |
10300034 |
T |
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| Q |
205 |
ttttgagtatcat |
217 |
Q |
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|||||| |||||| |
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| T |
10300033 |
ttttgattatcat |
10300021 |
T |
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