View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18374_high_7 (Length: 450)
Name: NF18374_high_7
Description: NF18374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18374_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 10 - 433
Target Start/End: Original strand, 33975849 - 33976264
Alignment:
| Q |
10 |
aagaatatgacatgttaggattgagacttgttcaattttgtttttt-------aaattactattattttctctcaaattaacgcttacgttgttcatgtt |
102 |
Q |
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| T |
33975849 |
aagaaaatgacatgttaggattgagacttgttcaatttttattttttttttaaaaattactattattttctctcaaattaacgcttacgttgttcatgtt |
33975948 |
T |
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| Q |
103 |
tgttcctaacattgttcaaaggttttattggcacaggttacatggtggttgcctgtgttggaaagaatgtgcatgaggagtaatgttcttggtcattgaa |
202 |
Q |
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| T |
33975949 |
tgttcctaacattgttcaaaggttttattggcacaggttacatggtggttacctgtgttggaaagaatgtgcatgaggagtaatgttcttggtcattgaa |
33976048 |
T |
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| Q |
203 |
gatattctcgttaccaaagaattgacaagggttggtggattcatggtgttttatttatgaaaggaagacgaacaaagttatataattgtttagtagaaat |
302 |
Q |
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| T |
33976049 |
gatattctcgttaccaaagaattgacaagggttggtggattcatggtgttttttttatgaaaggaagacgaacaaagttat---------------aatt |
33976133 |
T |
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| Q |
303 |
gagtatatgtaaaatatggatgaaagatgtgtttaagtttctaatgatttcacaaatcaaaggttgaagaggaataatggaagggttatttgttttctaa |
402 |
Q |
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| T |
33976134 |
gagtatatgtaaaatatggatgaaagatgtgtttaagtttctaatgatttcacaaatcaaaggttgaagaggaataatggaagggttatttgttttctaa |
33976233 |
T |
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| Q |
403 |
ttagtactgcatcaatagtatataatgtcat |
433 |
Q |
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| T |
33976234 |
ttagtactgcatcaatagtatataatgtcat |
33976264 |
T |
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