View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18374_low_15 (Length: 391)
Name: NF18374_low_15
Description: NF18374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18374_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 32628114 - 32628324
Alignment:
| Q |
18 |
agagaggaccatatagtctaaagtcccaaccaacagcccaaaccccagcaccagagtgacgctcagcaatcaaagccaccacactagtttgcatagcacc |
117 |
Q |
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| T |
32628114 |
agagaggaccatatagtctaaagtcccaaccaacagcccaaaccccagcaccagagtgacgctcagcaatcaaagccaccacactagtttgcatagcacc |
32628213 |
T |
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| Q |
118 |
aactaagcatattaaggttgataatgacatttctgctggatactttttcaacgtcactgactgcaatttatacatacatatacataacacactttattat |
217 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
32628214 |
aactaagcatattaaggttgatagtgacatttctgctggatactttttcaacgttactgactgcaatttatacatac--atacataacacactttattat |
32628311 |
T |
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| Q |
218 |
acatgatacgtat |
230 |
Q |
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||||||||||||| |
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| T |
32628312 |
acatgatacgtat |
32628324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 300 - 382
Target Start/End: Original strand, 32628394 - 32628476
Alignment:
| Q |
300 |
tgaccaagccacacaacccagcattagaaagagtgttcctgagacccaatgtttgagagtttgcgtgtcgtgacttgcagaat |
382 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32628394 |
tgaccaagccacacaacccagcattagaaagagtgttcctgagacccaatgtttgagagtttgcgtgtcgtgacttgcagaat |
32628476 |
T |
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