View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18374_low_20 (Length: 328)
Name: NF18374_low_20
Description: NF18374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18374_low_20 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 10 - 328
Target Start/End: Complemental strand, 13898114 - 13897796
Alignment:
| Q |
10 |
agaagcaaaggaaaatagcgagtatcgagtttcattcgacaaattttaggaagttaacaattgagtcaatttttgagcttgtgaacaataggctcatacc |
109 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13898114 |
agaaacaaaggaaaatagcgagtatcgagtttcattcgacaaattttaggaagttaacaattaagtcaatttttgagcttgtgaacaataggctcatacc |
13898015 |
T |
|
| Q |
110 |
tgtcttagaatcatcattgaagaaaaatgttgcaatagatcttcaagatattttgttgagactaacttttgataatgtttgtatgatagcttttggtgtt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13898014 |
tgtcttagaatcatcattgaagaaaaatgttgcaatagatcttcaagatattttgttgagactaacttttgataatgtttgtatgatagcttttggtgtt |
13897915 |
T |
|
| Q |
210 |
gatcctggttgtttacaacctcatttgcctgaaattccctttgctgcagcttttgaggatgcaacagaagctactttgtttcgatttgtcatgccggttt |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13897914 |
gatcctggttgtttacaacctcatttgcctgaaattccctttgctgcagcttttgaggatgcaacagaagctactttgtttcgatttgtcatgccggttt |
13897815 |
T |
|
| Q |
310 |
gtgtatggaaggctatgag |
328 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
13897814 |
gtgtatggaaggctatgag |
13897796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 10 - 328
Target Start/End: Original strand, 13887090 - 13887408
Alignment:
| Q |
10 |
agaagcaaaggaaaatagcgagtatcgagtttcattcgacaaattttaggaagttaacaattgagtcaatttttgagcttgtgaacaataggctcatacc |
109 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||||||| ||||| |||||||| ||||||| ||| ||| | ||||||||||||||||||||||||||||| |
|
|
| T |
13887090 |
agaaacaaaggaaaacagcgagtatcgagtttcattcaacaaagtttaggaaattaacaactgattcattgtttgagcttgtgaacaataggctcatacc |
13887189 |
T |
|
| Q |
110 |
tgtcttagaatcatcattgaagaaaaatgttgcaatagatcttcaagatattttgttgagactaacttttgataatgtttgtatgatagcttttggtgtt |
209 |
Q |
| |
|
||||||||| ||||| ||||||||| ||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
13887190 |
tgtcttagattcatcgttgaagaaatcggtttccatcgatcttcaagatattttgttgagactaacttttgataatgtttgtatgatagcttttgatgtt |
13887289 |
T |
|
| Q |
210 |
gatcctggttgtttacaacctcatttgcctgaaattccctttgctgcagcttttgaggatgcaacagaagctactttgtttcgatttgtcatgccggttt |
309 |
Q |
| |
|
|||||| |||||| |||| |||||| |||||||| || ||||| ||||||||| |||||||| ||||| |||||| ||||||||||| ||| |||| |
|
|
| T |
13887290 |
gatccttcttgtttgcaacttcatttacctgaaataccttttgcaagagcttttgaagatgcaaccgaagcaactttgcttcgatttgtcgcgccagttt |
13887389 |
T |
|
| Q |
310 |
gtgtatggaaggctatgag |
328 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
13887390 |
gtgtatggaaggctatgag |
13887408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 183 - 253
Target Start/End: Complemental strand, 7295946 - 7295876
Alignment:
| Q |
183 |
aatgtttgtatgatagcttttggtgttgatcctggttgtttacaacctcatttgcctgaaattccctttgc |
253 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||||||| |||||| |||||| |||||| || ||||| |
|
|
| T |
7295946 |
aatgtttgcatgatatcttttggtgttgatcctggttgttcacaaccacatttgtttgaaataccatttgc |
7295876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 10 - 328
Target Start/End: Complemental strand, 1035171 - 1034853
Alignment:
| Q |
10 |
agaagcaaaggaaaatagcgagtatcgagtttcattcgacaaattttaggaagttaacaattgagtcaatttttgagcttgtgaacaataggctcatacc |
109 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1035171 |
agaaacaaaggaaaatagctagtatcgagtttcattcgacaaattttagaaagttaacaaatgagtcaatttttgagcttgtgaacaataggctcatacc |
1035072 |
T |
|
| Q |
110 |
tgtcttagaatcatcattgaagaaaaatgttgcaatagatcttcaagatattttgttgagactaacttttgataatgtttgtatgatagcttttggtgtt |
209 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1035071 |
agtcttagaattatcattgaagaaaaatgttgccatagatcttcaagatattttgctgagactaacttttgataatgtttgtatgatagcttttggtgtt |
1034972 |
T |
|
| Q |
210 |
gatcctggttgtttacaacctcatttgcctgaaattccctttgctgcagcttttgaggatgcaacagaagctactttgtttcgatttgtcatgccggttt |
309 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||| ||||| ||| |
|
|
| T |
1034971 |
gatcctggttgcttacaacctcatttgcctgaaattccctttgcaggagcttttgaggatgcaacagaagctattttgtttcgatttgtcgtgccgattt |
1034872 |
T |
|
| Q |
310 |
gtgtatggaaggctatgag |
328 |
Q |
| |
|
|||||||||| |||||||| |
|
|
| T |
1034871 |
gtgtatggaaagctatgag |
1034853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 146 - 223
Target Start/End: Complemental strand, 28667315 - 28667238
Alignment:
| Q |
146 |
agatcttcaagatattttgttgagactaacttttgataatgtttgtatgatagcttttggtgttgatcctggttgttt |
223 |
Q |
| |
|
|||||||||||| ||| | || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28667315 |
agatcttcaagacattcttttaagactaacttttgacaatgtttgtatgatagcttttggtgttgatcctggttgttt |
28667238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University