View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18374_low_24 (Length: 313)
Name: NF18374_low_24
Description: NF18374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18374_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 19 - 306
Target Start/End: Complemental strand, 37957992 - 37957705
Alignment:
| Q |
19 |
cttgttgctcctcaagtcgcagagtgttcgtctcataggaatatggggcatgggagggacaggcaaaacaacaattgccagtgcaatctatcataaactc |
118 |
Q |
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| T |
37957992 |
cttgttgctcctcaagtcgcagagtgttcgtctcataggaatatggggcatgggagggacaggcaaaacaacaattgccagtgcaatctatcataaactc |
37957893 |
T |
|
| Q |
119 |
gcaactcagttcagttccagaagcatcgttctaaatgtgaaacaagaaatagaaagagctggactagaccatgtacgaagaaaatacttatcagaacttc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37957892 |
gcaactcagttcagttccagaagcatcgttctaaatgtgaaacaagaaatcgaaagagctggactagaccatgtacgaagaaaatacttatcagaacttc |
37957793 |
T |
|
| Q |
219 |
tagatgaagacattacatcctctaaatccaatttttcatttgatccaaggctcaaacggacaaagattctccttgttcttgatgatgt |
306 |
Q |
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| T |
37957792 |
tagatgaagacattacatcctctaaatccaatttttcatttgatccaaggctcaaacggacaaagattctccttgttcttgatgatgt |
37957705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 19 - 303
Target Start/End: Original strand, 37929595 - 37929879
Alignment:
| Q |
19 |
cttgttgctcctcaagtcgcagagtgttcgtctcataggaatatggggcatgggagggacaggcaaaacaacaattgccagtgcaatctatcataaactc |
118 |
Q |
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||||||||||||| ||||| | |||||| ||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||| || || |
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| T |
37929595 |
cttgttgctcctcgagtcggctactgttcgaatcataggaatacggggcatgggagggataggcaaaacaacaattgccaatgcaatctatcatcaattc |
37929694 |
T |
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| Q |
119 |
gcaactcagttcagttccagaagcatcgttctaaatgtgaaacaagaaatagaaagagctggactagaccatgtacgaagaaaatacttatcagaacttc |
218 |
Q |
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| T |
37929695 |
tcaactcagttcagttccaaaagcatcattctaaatgctcaacaagaaatagaaagagctggactacgccatgtacaaagaaaatacttatcacaacttc |
37929794 |
T |
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| Q |
219 |
tagatgaagacattacatcctctaaatccaatttttcatttgatccaaggctcaaacggacaaagattctccttgttcttgatga |
303 |
Q |
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|||| |||||||||||||||||| || ||| ||||||| ||||||||| |||| |||| ||||||||||||||||||| |
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| T |
37929795 |
tagaggaagacattacatcctctggattcaagttttcatacattccaaggcttcaacgaggaaaggttctccttgttcttgatga |
37929879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 54 - 306
Target Start/End: Complemental strand, 44644770 - 44644518
Alignment:
| Q |
54 |
taggaatatggggcatgggagggacaggcaaaacaacaattgccagtgcaatctatcataaactcgcaactcagttcagttccagaagcatcgttctaaa |
153 |
Q |
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||||||| ||||| |||||||| | ||| |||||||||||||| |||||||| |||| ||| | ||||| || ||||||| | |||||| | ||||| |
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| T |
44644770 |
taggaatctggggtatgggaggaatagggaaaacaacaattgctagtgcaatatatcgcaaattggcaacccaattcagttttaacagcatcatcctaaa |
44644671 |
T |
|
| Q |
154 |
tgtgaaacaagaaatagaaagagctggactagaccatgtacgaagaaaatacttatcagaacttctagatgaagacattacatcctctaaatccaatttt |
253 |
Q |
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||| ||||||||||||| ||| |||||| ||||| ||| ||| ||||| || || ||||| | ||| ||| ||||||||| || | || |
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| T |
44644670 |
tgttcaacaagaaatagagagatttggactgcaccatatacaaagcaaatatagatttgagcttctgggagaaaacaacacatcctctggattatgtctt |
44644571 |
T |
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| Q |
254 |
tcatttgatccaaggctcaaacggacaaagattctccttgttcttgatgatgt |
306 |
Q |
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| T |
44644570 |
tcatttgatcaaaggctcaaatggactaaggctctccttgttcttgatgatgt |
44644518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 184
Target Start/End: Original strand, 25721218 - 25721351
Alignment:
| Q |
51 |
tcataggaatatggggcatgggagggacaggcaaaacaacaattgccagtgcaatctatcataaactcgcaactcagttcagttccagaagcatcgttct |
150 |
Q |
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|||||||||| ||||| |||||||| | ||||||||| ||||||| ||||||| ||||| | | |||||||| |||| ||| || ||||| | || |
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| T |
25721218 |
tcataggaatttggggtatgggaggaataggcaaaaccgaaattgcccgtgcaatatatcacaggtttgcaactcaattcaattctagcagcatgatact |
25721317 |
T |
|
| Q |
151 |
aaatgtgaaacaagaaatagaaagagctggacta |
184 |
Q |
| |
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|||||| ||||||||||| |||||| ||||||| |
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| T |
25721318 |
aaatgttgaacaagaaataaaaagagttggacta |
25721351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 96
Target Start/End: Complemental strand, 34727887 - 34727847
Alignment:
| Q |
56 |
ggaatatggggcatgggagggacaggcaaaacaacaattgc |
96 |
Q |
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| T |
34727887 |
ggaatatggggcatgggagggatcggcaaaacaacaattgc |
34727847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 96
Target Start/End: Complemental strand, 34731045 - 34731005
Alignment:
| Q |
56 |
ggaatatggggcatgggagggacaggcaaaacaacaattgc |
96 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| |
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| T |
34731045 |
ggaatatggggcatgggagggatcggcaaaacaacaattgc |
34731005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 96
Target Start/End: Original strand, 18928839 - 18928879
Alignment:
| Q |
56 |
ggaatatggggcatgggagggacaggcaaaacaacaattgc |
96 |
Q |
| |
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||||||||||| |||||||||| ||||||||||||||||| |
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| T |
18928839 |
ggaatatggggtatgggagggatcggcaaaacaacaattgc |
18928879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 34735640 - 34735604
Alignment:
| Q |
60 |
tatggggcatgggagggacaggcaaaacaacaattgc |
96 |
Q |
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|||||||||||||||||| ||||||||||||||||| |
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| T |
34735640 |
tatggggcatgggagggatcggcaaaacaacaattgc |
34735604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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