View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18374_low_25 (Length: 309)

Name: NF18374_low_25
Description: NF18374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18374_low_25
NF18374_low_25
[»] chr3 (20 HSPs)
chr3 (149-296)||(36383078-36383225)
chr3 (160-271)||(15005049-15005160)
chr3 (160-276)||(14434712-14434828)
chr3 (161-257)||(15031312-15031408)
chr3 (160-272)||(48755418-48755531)
chr3 (160-276)||(11989117-11989233)
chr3 (160-252)||(43562696-43562788)
chr3 (197-276)||(44967983-44968062)
chr3 (160-234)||(1426575-1426649)
chr3 (179-276)||(26498620-26498717)
chr3 (179-276)||(33343115-33343211)
chr3 (188-277)||(38498222-38498311)
chr3 (160-276)||(21514835-21514951)
chr3 (154-261)||(18445492-18445599)
chr3 (160-246)||(15031279-15031365)
chr3 (162-251)||(26920248-26920337)
chr3 (225-277)||(20759083-20759135)
chr3 (245-279)||(15031289-15031323)
chr3 (245-278)||(33343107-33343140)
chr3 (204-261)||(41984992-41985049)
[»] chr7 (14 HSPs)
chr7 (160-276)||(27508667-27508783)
chr7 (160-259)||(14197548-14197647)
chr7 (156-276)||(6441417-6441536)
chr7 (158-261)||(45012935-45013038)
chr7 (172-257)||(43257355-43257440)
chr7 (156-261)||(38761079-38761184)
chr7 (162-270)||(5080187-5080295)
chr7 (186-272)||(36150933-36151019)
chr7 (156-257)||(37787778-37787879)
chr7 (160-252)||(15000737-15000829)
chr7 (179-246)||(45012982-45013049)
chr7 (245-279)||(6441488-6441522)
chr7 (245-279)||(27508677-27508711)
chr7 (245-279)||(37787831-37787865)
[»] chr5 (16 HSPs)
chr5 (160-276)||(2555530-2555646)
chr5 (160-277)||(17497086-17497203)
chr5 (160-276)||(30852670-30852786)
chr5 (164-276)||(10760080-10760191)
chr5 (154-261)||(19491757-19491864)
chr5 (160-270)||(21943821-21943931)
chr5 (184-282)||(34419595-34419693)
chr5 (156-237)||(12895615-12895695)
chr5 (161-270)||(20429955-20430064)
chr5 (156-251)||(19564752-19564847)
chr5 (164-261)||(13753316-13753413)
chr5 (200-276)||(21211489-21211565)
chr5 (160-275)||(11298050-11298165)
chr5 (177-256)||(31912288-31912367)
chr5 (154-208)||(32539375-32539429)
chr5 (179-251)||(30100708-30100780)
[»] chr4 (27 HSPs)
chr4 (160-276)||(5448287-5448403)
chr4 (160-263)||(10380680-10380783)
chr4 (160-276)||(18830646-18830762)
chr4 (160-276)||(2634096-2634212)
chr4 (160-270)||(5324761-5324871)
chr4 (160-257)||(11821814-11821911)
chr4 (156-257)||(1387369-1387470)
chr4 (179-276)||(22017954-22018051)
chr4 (160-276)||(2063237-2063353)
chr4 (160-236)||(3370056-3370132)
chr4 (179-246)||(1387444-1387511)
chr4 (154-261)||(9826717-9826824)
chr4 (160-246)||(37695034-37695120)
chr4 (160-257)||(30470909-30471006)
chr4 (162-258)||(18500691-18500787)
chr4 (179-257)||(10757661-10757739)
chr4 (179-257)||(10970832-10970910)
chr4 (161-263)||(47144781-47144883)
chr4 (160-276)||(18836351-18836466)
chr4 (160-276)||(37694972-37695088)
chr4 (160-259)||(2232461-2232558)
chr4 (179-270)||(8951098-8951189)
chr4 (177-246)||(18830708-18830777)
chr4 (179-252)||(30378852-30378924)
chr4 (156-257)||(47943539-47943640)
chr4 (156-237)||(55382667-55382748)
chr4 (181-237)||(3370045-3370101)
[»] scaffold0407 (6 HSPs)
scaffold0407 (161-272)||(911-1022)
scaffold0407 (161-272)||(7375-7486)
scaffold0407 (156-246)||(969-1059)
scaffold0407 (156-246)||(7433-7523)
scaffold0407 (156-208)||(943-995)
scaffold0407 (156-208)||(7407-7459)
[»] scaffold0011 (1 HSPs)
scaffold0011 (156-276)||(190250-190370)
[»] chr8 (17 HSPs)
chr8 (160-276)||(31253995-31254111)
chr8 (160-276)||(35202689-35202806)
chr8 (160-276)||(23976163-23976279)
chr8 (160-276)||(22469505-22469620)
chr8 (156-276)||(25149310-25149430)
chr8 (160-255)||(4289018-4289113)
chr8 (160-255)||(41358775-41358870)
chr8 (156-270)||(37543870-37543984)
chr8 (156-261)||(18324084-18324189)
chr8 (156-224)||(29585574-29585642)
chr8 (203-276)||(12106939-12107012)
chr8 (160-240)||(24609134-24609214)
chr8 (162-242)||(21124420-21124500)
chr8 (179-246)||(25149372-25149439)
chr8 (179-246)||(29585584-29585651)
chr8 (245-279)||(31254005-31254039)
chr8 (192-261)||(37494396-37494465)
[»] chr1 (7 HSPs)
chr1 (160-276)||(37608063-37608178)
chr1 (156-276)||(50335528-50335648)
chr1 (160-276)||(13735536-13735653)
chr1 (245-279)||(32374110-32374144)
chr1 (179-246)||(50335519-50335586)
chr1 (181-237)||(13735525-13735581)
chr1 (162-222)||(32374092-32374152)
[»] chr2 (10 HSPs)
chr2 (160-259)||(31820005-31820104)
chr2 (179-276)||(32092831-32092928)
chr2 (172-270)||(17914076-17914174)
chr2 (156-270)||(39598585-39598699)
chr2 (160-276)||(22092951-22093067)
chr2 (179-246)||(39598641-39598708)
chr2 (176-246)||(8219214-8219284)
chr2 (160-276)||(24006952-24007068)
chr2 (160-257)||(31499441-31499538)
chr2 (160-234)||(8219230-8219304)
[»] chr6 (12 HSPs)
chr6 (160-257)||(19295372-19295469)
chr6 (154-261)||(21222552-21222659)
chr6 (160-257)||(25089243-25089340)
chr6 (158-276)||(10672690-10672808)
chr6 (160-276)||(13536651-13536768)
chr6 (160-252)||(10862104-10862196)
chr6 (179-246)||(19295415-19295482)
chr6 (197-276)||(26705156-26705235)
chr6 (161-237)||(12651194-12651269)
chr6 (179-246)||(21222599-21222666)
chr6 (245-277)||(19295457-19295489)
chr6 (162-246)||(26705089-26705173)
[»] scaffold0102 (1 HSPs)
scaffold0102 (161-274)||(23984-24097)
[»] scaffold0003 (2 HSPs)
scaffold0003 (160-261)||(314169-314270)
scaffold0003 (181-246)||(314158-314223)
[»] scaffold0049 (1 HSPs)
scaffold0049 (198-273)||(59780-59855)
[»] scaffold0026 (1 HSPs)
scaffold0026 (154-261)||(57534-57641)
[»] scaffold1300 (1 HSPs)
scaffold1300 (179-261)||(1460-1542)
[»] scaffold0024 (1 HSPs)
scaffold0024 (154-261)||(127889-127996)
[»] scaffold0039 (1 HSPs)
scaffold0039 (213-261)||(27576-27624)
[»] scaffold0047 (1 HSPs)
scaffold0047 (179-261)||(11683-11765)
[»] scaffold0018 (1 HSPs)
scaffold0018 (245-279)||(72015-72049)
[»] scaffold0066 (1 HSPs)
scaffold0066 (160-257)||(15456-15553)


Alignment Details
Target: chr3 (Bit Score: 128; Significance: 4e-66; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 149 - 296
Target Start/End: Original strand, 36383078 - 36383225
Alignment:
Q  149 tttgaatactttgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaat 248  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||| ||||    
T  36383078 tttgaatactttgttagtcaatttaatccttgaatgcagactttgttggtcaatttagtctctgaatatagacttcgttagtcactttagtccctaaaat 36383177  T
Q  249 tgactaacagagtttgcattcagggactaaagtgccccatttttacct 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  36383178 tgactaacagagtttgcattcagggactaaagtgccccatttttacct 36383225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 160 - 271
Target Start/End: Original strand, 15005049 - 15005160
Alignment:
Q  160 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacaga 259  Q
    |||||||||||||||| | ||||||||||||  ||| || |||||||||  | |||||| |||| ||||||||||| ||||||||||||||||  |||||    
T  15005049 tgttagtcaatttaatccctgaatgcagactcagttagttaatttagtccttgaatgtatactttgttagtcacttaaatccctgaaattgaccgacaga 15005148  T
Q  260 gtttgcattcag 271  Q
    || | |||||||    
T  15005149 gtctacattcag 15005160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 160 - 276
Target Start/End: Complemental strand, 14434828 - 14434712
Alignment:
Q  160 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacaga 259  Q
    |||||||||||||| | | |||||||| |||  | | || |||||||||||| |||||||||| || ||||||||||| ||||||||||| ||||||| |    
T  14434828 tgttagtcaatttagtccctgaatgcaaactcagatagttaatttagtctctgaatgtagactccgctagtcactttagtccctgaaattaactaacaaa 14434729  T
Q  260 gtttgcattcagggact 276  Q
    || | |||||| |||||    
T  14434728 gtctacattcaaggact 14434712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 161 - 257
Target Start/End: Original strand, 15031312 - 15031408
Alignment:
Q  161 gttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaaca 257  Q
    ||||||||||||| |   |||||| |||||  ||| |||||||||||| || |||||||||| |||||||||||||| |||||||||||||| ||||    
T  15031312 gttagtcaatttagtcactgaatgtagactccgttagtcaatttagtcactgaatgtagactccgttagtcactttagtccctgaaattgaccaaca 15031408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 160 - 272
Target Start/End: Original strand, 48755418 - 48755531
Alignment:
Q  160 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttc-gttagtcactttaatccctgaaattgactaacag 258  Q
    |||||||||||||| | | ||||||||||||  ||| ||||||||||||  | ||||||||||   |||||||||||| | ||||||||||||| |||||    
T  48755418 tgttagtcaatttagtccctgaatgcagactccgttagtcaatttagtccatgaatgtagactcgtgttagtcactttgacccctgaaattgaccaacag 48755517  T
Q  259 agtttgcattcagg 272  Q
    ||| | ||||||||    
T  48755518 agtctacattcagg 48755531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 160 - 276
Target Start/End: Complemental strand, 11989233 - 11989117
Alignment:
Q  160 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacaga 259  Q
    ||||||||||| || | | ||||||||||||  |||  |||||||||||  | |||||||||| |||||| ||||||| || ||||||||||| ||||||    
T  11989233 tgttagtcaatctagtccctgaatgcagactccgttaatcaatttagtccttaaatgtagactccgttagccactttagtctctgaaattgaccaacaga 11989134  T
Q  260 gtttgcattcagggact 276  Q
    || |  |||||||||||    
T  11989133 gtctatattcagggact 11989117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 160 - 252
Target Start/End: Complemental strand, 43562788 - 43562696
Alignment:
Q  160 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgac 252  Q
    |||| |||||||||||  ||||||||||||||  || ||||||||| || || ||||||||| ||||||||||||||| || || ||||||||    
T  43562788 tgtttgtcaatttaatcgttgaatgcagacttcattagtcaatttaatccctgaatgtagacatcgttagtcactttagtctctaaaattgac 43562696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 276
Target Start/End: Original strand, 44967983 - 44968062
Alignment:
Q  197 gtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacagagtttgcattcagggact 276  Q
    ||||||||||||| | ||||||||||   ||||||||||||||||||||||||||| |||| ||| | |||| |||||||    
T  44967983 gtcaatttagtctttgaatgtagactctcttagtcactttaatccctgaaattgaccaacaaagtctacatttagggact 44968062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 160 - 234
Target Start/End: Original strand, 1426575 - 1426649
Alignment:
Q  160 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcact 234  Q
    |||||||||||||| | | ||||||||||||  ||| |||||||||||| || |||||||||| |||||||||||    
T  1426575 tgttagtcaatttagtccctgaatgcagactccgttagtcaatttagtccctaaatgtagactccgttagtcact 1426649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 276
Target Start/End: Complemental strand, 26498717 - 26498620
Alignment:
Q  179 tgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacagagtttgcattcagggact 276  Q
    |||||| |||||  ||| |||||||||||| || |||| | ||| |||||||||||||| |||||||||||||| ||||  || | ||||||||||||    
T  26498717 tgaatgtagactcggttagtcaatttagtcactgaatgcatactccgttagtcactttagtccctgaaattgaccaacatggtctacattcagggact 26498620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 276
Target Start/End: Original strand, 33343115 - 33343211
Alignment:
Q  179 tgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacagagtttgcattcagggact 276  Q
    |||||||| ||| |||| |||||||||||| || ||||||||||| |||| ||| |||| | |||||||||||| ||||||||||  ||||| |||||    
T  33343115 tgaatgcaaactatgttagtcaatttagtccctgaatgtagactttgttaatca-tttagttcctgaaattgaccaacagagtttatattcaaggact 33343211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 277
Target Start/End: Original strand, 38498222 - 38498311
Alignment:
Q  188 actttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacagagtttgcattcagggacta 277  Q
    |||||||| |||||||||||| || ||||||||||   |||||||||||| ||||| ||||| ||||||| ||| | ||||||| |||||    
T  38498222 actttgttagtcaatttagtccctgaatgtagactctattagtcactttagtccctaaaattaactaacaaagtctacattcagagacta 38498311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 160 - 276
Target Start/End: Original strand, 21514835 - 21514951
Alignment:
Q  160 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacaga 259  Q
    ||||||| |||||| | | ||||||| ||||| ||| ||||||||||||  | ||||| ||||  |||||| |||||||||| |||||||||| || | |    
T  21514835 tgttagttaatttagtccctgaatgcggacttcgttagtcaatttagtccttgaatgtggactctgttagttactttaatccatgaaattgaccaatata 21514934  T
Q  260 gtttgcattcagggact 276  Q
    || | ||||||||||||    
T  21514935 gtctacattcagggact 21514951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 261
Target Start/End: Complemental strand, 18445599 - 18445492
Alignment:
Q  154 atactttgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgact 253  Q
    ||||| |||||||||| ||| |   ||||||||||||| |||  |||||||| || |  ||| ||||||  ||||||||| ||||||| |||||||||||    
T  18445599 atactatgttagtcaacttagtatctgaatgcagacttcgttaatcaatttaatcccagaatttagactcagttagtcacattaatccttgaaattgact 18445500  T
Q  254 aacagagt 261  Q
    ||||||||    
T  18445499 aacagagt 18445492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 246
Target Start/End: Original strand, 15031279 - 15031365
Alignment:
Q  160 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaa 246  Q
    |||||||||||||| | | |||||||| |||  ||| |||||||||||| || |||||||||| ||||||||| |||| || |||||    
T  15031279 tgttagtcaatttagtccctgaatgcaaactccgttagtcaatttagtcactgaatgtagactccgttagtcaatttagtcactgaa 15031365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 251
Target Start/End: Original strand, 26920248 - 26920337
Alignment:
Q  162 ttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattga 251  Q
    ||||| |||||| ||| | |||| | |||| ||| ||||||||||||  | ||||||| || | ||||||||||||||||||||||||||    
T  26920248 ttagttaatttagttcctcaatgtatacttcgttagtcaatttagtccttaaatgtaggctccattagtcactttaatccctgaaattga 26920337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 277
Target Start/End: Original strand, 20759083 - 20759135
Alignment:
Q  225 gttagtcactttaatccctgaaattgactaacagagtttgcattcagggacta 277  Q
    ||||||||||||| ||||||||||||||||||| ||| | |||||| ||||||    
T  20759083 gttagtcactttagtccctgaaattgactaacaaagtctacattcaaggacta 20759135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 279
Target Start/End: Complemental strand, 15031323 - 15031289
Alignment:
Q  245 aaattgactaacagagtttgcattcagggactaaa 279  Q
    |||||||||||| ||||||||||||||||||||||    
T  15031323 aaattgactaacggagtttgcattcagggactaaa 15031289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 278
Target Start/End: Complemental strand, 33343140 - 33343107
Alignment:
Q  245 aaattgactaacagagtttgcattcagggactaa 278  Q
    ||||||||||||| ||||||||||||||||||||    
T  33343140 aaattgactaacatagtttgcattcagggactaa 33343107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 261
Target Start/End: Complemental strand, 41985049 - 41984992
Alignment:
Q  204 tagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacagagt 261  Q
    ||||| || ||| ||||||  ||||||||| ||||||| |||||||||||||||||||    
T  41985049 tagtccctgaatttagactcagttagtcacattaatccttgaaattgactaacagagt 41984992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 6e-31; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 160 - 276
Target Start/End: Original strand, 27508667 - 27508783
Alignment:
Q  160 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacaga 259  Q
    |||||||||||||| | | |||||||||||| |||| |||||||||||| || |||||||||| |||||||||||||| ||| |||||||||||||||||    
T  27508667 tgttagtcaatttagtccctgaatgcagactctgttagtcaatttagtccctgaatgtagactccgttagtcactttagtccatgaaattgactaacaga 27508766  T
Q  260 gtttgcattcagggact 276  Q
    || | ||||||||||||    
T  27508767 gtctacattcagggact 27508783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 160 - 259
Target Start/End: Complemental strand, 14197647 - 14197548
Alignment:
Q  160 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacaga 259  Q
    |||||||||||||||| | ||||||||||||  ||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||    
T  14197647 tgttagtcaatttaatccctgaatgcagactccgttagtcaatttagtctctcaatgtagactccgttagtcactttagtccctgaaattgaccaacaga 14197548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 156 - 276
Target Start/End: Complemental strand, 6441536 - 6441417
Alignment:
Q  156 actttgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaa 255  Q
    |||||||||||||||||| | | |||||||||||| |||| ||||||||||||||| |||||||||| |||||||||||||  ||| |||||||||||||    
T  6441536 actttgttagtcaatttagtccctgaatgcagactctgttagtcaatttagtctctaaatgtagactccgttagtcacttttgtccttgaaattgactaa 6441437  T
Q  256 cagagtttgcattcagggact 276  Q
     ||||| | ||||||||||||    
T  6441436 -agagtctacattcagggact 6441417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 158 - 261
Target Start/End: Complemental strand, 45013038 - 45012935
Alignment:
Q  158 tttgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaaca 257  Q
    |||||||||||||||| | | ||||||||||||  ||| ||||||||| ||||| |||||||||| || || |||||||| |||||||||||||| || |    
T  45013038 tttgttagtcaatttagtccctgaatgcagactccgttagtcaatttaatctctgaatgtagactccgctaatcactttagtccctgaaattgaccaata 45012939  T
Q  258 gagt 261  Q
    ||||    
T  45012938 gagt 45012935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 172 - 257
Target Start/End: Complemental strand, 43257440 - 43257355
Alignment:
Q  172 taattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaaca 257  Q
    |||| |||||||  ||||| |||| |||||||||||| || |||||||||||||||||||| |||| |||||||||||||| ||||    
T  43257440 taatccttgaatatagactctgttagtcaatttagtccctaaatgtagacttcgttagtcaatttactccctgaaattgaccaaca 43257355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 156 - 261
Target Start/End: Complemental strand, 38761184 - 38761079
Alignment:
Q  156 actttgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaa 255  Q
    ||||||||| |||||||| | || ||||||||||| |||| |||||||||||| || |||| |||||  ||||||||||||| ||||  |||||||  ||    
T  38761184 actttgttaatcaatttagtcctcgaatgcagactctgttagtcaatttagtccctgaatgcagactctgttagtcactttagtcccaaaaattgatcaa 38761085  T
Q  256 cagagt 261  Q
    ||||||    
T  38761084 cagagt 38761079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 162 - 270
Target Start/End: Complemental strand, 5080295 - 5080187
Alignment:
Q  162 ttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacagagt 261  Q
    |||||||||||| | | ||||||||||||  |||  ||||||||||  || |||||||||| ||||| ||| |||| ||| |||||||||||||||||||    
T  5080295 ttagtcaatttagtccctgaatgcagactccgttaatcaatttagtacctgaatgtagactccgttaatcattttagtccttgaaattgactaacagagt 5080196  T
Q  262 ttgcattca 270  Q
     | ||||||    
T  5080195 ctacattca 5080187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 186 - 272
Target Start/End: Original strand, 36150933 - 36151019
Alignment:
Q  186 agactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacagagtttgcattcagg 272  Q
    ||||| |||| ||||||||||||||| |||||| ||| ||||||||| |||| ||| |||||||||| |||| ||| | ||||||||    
T  36150933 agactctgttagtcaatttagtctctgaatgtaaactccgttagtcattttagtccttgaaattgaccaacaaagtctacattcagg 36151019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 257
Target Start/End: Complemental strand, 37787879 - 37787778
Alignment:
Q  156 actttgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaa 255  Q
    |||||||||||||||||| | | |||||||| ||| |||| ||||||||||||  | |||||||||| || |||||| |||||||  | |||||||| ||    
T  37787879 actttgttagtcaatttagtccctgaatgcatactctgttagtcaatttagtcgttgaatgtagactccgctagtcattttaatctttaaaattgacaaa 37787780  T
Q  256 ca 257  Q
    ||    
T  37787779 ca 37787778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 160 - 252
Target Start/End: Original strand, 15000737 - 15000829
Alignment:
Q  160 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgac 252  Q
    ||||||||| |||| | |||||||| |||||  | | |||||||||||| || |||||||||| |||| | ||||||| ||||||||||||||    
T  15000737 tgttagtcagtttagtccttgaatgaagactccgatagtcaatttagtcccttaatgtagactccgttggacactttagtccctgaaattgac 15000829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 179 - 246
Target Start/End: Complemental strand, 45013049 - 45012982
Alignment:
Q  179 tgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaa 246  Q
    |||||| ||| |||||| |||||||||||| || |||| ||||| ||||||||| ||||||| |||||    
T  45013049 tgaatgtagagtttgttagtcaatttagtccctgaatgcagactccgttagtcaatttaatctctgaa 45012982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 279
Target Start/End: Original strand, 6441488 - 6441522
Alignment:
Q  245 aaattgactaacagagtttgcattcagggactaaa 279  Q
    ||||||||||||||||| |||||||||||||||||    
T  6441488 aaattgactaacagagtctgcattcagggactaaa 6441522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 279
Target Start/End: Complemental strand, 27508711 - 27508677
Alignment:
Q  245 aaattgactaacagagtttgcattcagggactaaa 279  Q
    ||||||||||||||||| |||||||||||||||||    
T  27508711 aaattgactaacagagtctgcattcagggactaaa 27508677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 279
Target Start/End: Original strand, 37787831 - 37787865
Alignment:
Q  245 aaattgactaacagagtttgcattcagggactaaa 279  Q
    ||||||||||||||||| |||||||||||||||||    
T  37787831 aaattgactaacagagtatgcattcagggactaaa 37787865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 160 - 276
Target Start/End: Original strand, 2555530 - 2555646
Alignment:
Q  160 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacaga 259  Q
    |||||||||||||| |  |||||||||||||| ||| ||||| |||||| || || ||||||||||||||||||||||||||||||||||||| |||  |    
T  2555530 tgttagtcaatttagtcgttgaatgcagacttcgttagtcaaattagtccctgaacgtagacttcgttagtcactttaatccctgaaattgaccaacgca 2555629  T
Q  260 gtttgcattcagggact 276  Q
    || | ||||||||||||    
T  2555630 gtctacattcagggact 2555646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 160 - 277
Target Start/End: Original strand, 17497086 - 17497203
Alignment:
Q  160 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacaga 259  Q
    |||||||||||||| | |||||||||||| | |||| || ||||||||| || |||||||||| |||  ||||||||| |||||||||||||| |||| |    
T  17497086 tgttagtcaatttagtccttgaatgcagattctgttagttaatttagtccctgaatgtagactccgtcggtcactttagtccctgaaattgaccaacaaa 17497185  T
Q  260 gtttgcattcagggacta 277  Q
    || | |||||||||||||    
T  17497186 gtctacattcagggacta 17497203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 160 - 276
Target Start/End: Original strand, 30852670 - 30852786
Alignment:
Q  160 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacaga 259  Q
    |||||||||||||| | | ||||||||||||| ||  ||||||||||||||| |||||||| | |||||||||||||| | | |||||||||| ||||||    
T  30852670 tgttagtcaatttagtccctgaatgcagacttcgtaagtcaatttagtctctgaatgtagattccgttagtcactttagttcatgaaattgaccaacaga 30852769  T
Q  260 gtttgcattcagggact 276  Q
    || | || |||||||||    
T  30852770 gtctacaatcagggact 30852786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 164 - 276
Target Start/End: Complemental strand, 10760191 - 10760080
Alignment:
Q  164 agtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacagagttt 263  Q
    |||||||||| | | ||||||||||||  ||| |||||||||||| || |||||||||| ||||| ||| |||| ||| |||||||||| |||| |||||    
T  10760191 agtcaatttagtccctgaatgcagactccgttagtcaatttagtccctgaatgtagactccgttaatca-tttagtccttgaaattgaccaacaaagttt 10760093  T
Q  264 gcattcagggact 276  Q
     ||||||||||||    
T  10760092 acattcagggact 10760080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 154 - 261
Target Start/End: Original strand, 19491757 - 19491864
Alignment:
Q  154 atactttgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgact 253  Q
    ||||| |||||||||| ||| |   ||||||||||||| |||  ||||||||||| || ||| ||||||  ||||||||| ||||||| |||||||||||    
T  19491757 atactatgttagtcaacttagtatctgaatgcagacttcgttaatcaatttagtccctgaatttagactcagttagtcacattaatccttgaaattgact 19491856  T
Q  254 aacagagt 261  Q
    ||||||||    
T  19491857 aacagagt 19491864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 160 - 270
Target Start/End: Complemental strand, 21943931 - 21943821
Alignment:
Q  160 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacaga 259  Q
    ||||| |||||||| | | |||||||| |||||||| ||||||||||||| | |||||||| |  |||| |||||||| ||||| ||||||||||||| |    
T  21943931 tgttaatcaatttagtccctgaatgcatactttgttagtcaatttagtctttgaatgtagattatgttaatcactttagtccctaaaattgactaacaaa 21943832  T
Q  260 gtttgcattca 270  Q
    || | ||||||    
T  21943831 gtctacattca 21943821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 282
Target Start/End: Original strand, 34419595 - 34419693
Alignment:
Q  184 gcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacagagtttgcattcagggactaaagtg 282  Q
    |||||||| ||| ||||||||||||  | ||||||||||  ||| |||| |||| |||||||||||||| |||| ||| | ||||||||||||||||||    
T  34419595 gcagacttcgttagtcaatttagtccttaaatgtagactctgttggtcattttagtccctgaaattgaccaacaaagtctacattcagggactaaagtg 34419693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 156 - 237
Target Start/End: Original strand, 12895615 - 12895695
Alignment:
Q  156 actttgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcacttta 237  Q
    |||||||||||||||||||| ||| |||||||||| |||| ||||||||||| | | |||||||||||||||| | ||||||    
T  12895615 actttgttagtcaatttaatccttaaatgcagactctgttagtcaatttagt-tataaatgtagacttcgttaattacttta 12895695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 161 - 270
Target Start/End: Complemental strand, 20430064 - 20429955
Alignment:
Q  161 gttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacagag 260  Q
    ||||||||||||| ||| |||||||||||| |||| || |||||||| | | |||||| |||  ||| ||||||||| ||| |||||||||| |||||||    
T  20430064 gttagtcaatttagttcatgaatgcagactctgttagttaatttagtttttgaatgtaaactctgttcgtcactttagtccttgaaattgaccaacagag 20429965  T
Q  261 tttgcattca 270  Q
    | | ||||||    
T  20429964 tctacattca 20429955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 251
Target Start/End: Complemental strand, 19564847 - 19564752
Alignment:
Q  156 actttgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattga 251  Q
    |||| ||||||||||||| | ||||| | || |||  ||| ||||||||||||||| |||||||||| | ||| |||||||| |||||||||||||    
T  19564847 acttcgttagtcaatttattccttgattccatactccgttagtcaatttagtctctgaatgtagactccattaatcactttagtccctgaaattga 19564752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 261
Target Start/End: Complemental strand, 13753413 - 13753316
Alignment:
Q  164 agtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacagagt 261  Q
    |||||||||| | ||| ||||||||||  ||| |||||||||| | || || ||||||| | | |||||||||| |||||||||||||| ||||||||    
T  13753413 agtcaatttagtccttaaatgcagactccgttagtcaatttagcccctgaaagtagactccatcagtcactttagtccctgaaattgaccaacagagt 13753316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 200 - 276
Target Start/End: Complemental strand, 21211565 - 21211489
Alignment:
Q  200 aatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacagagtttgcattcagggact 276  Q
    |||||||||||| |||||||| | |||||||||||||| | |||||||||||| |||| ||| | ||||||| ||||    
T  21211565 aatttagtctctgaatgtagattgcgttagtcactttagttcctgaaattgaccaacaaagtctacattcagagact 21211489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 160 - 275
Target Start/End: Original strand, 11298050 - 11298165
Alignment:
Q  160 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacaga 259  Q
    |||||||||||||| |   ||||||||||||   || |||||||||||  || ||||||||||  |||| |||||||||||  | ||||||||||||| |    
T  11298050 tgttagtcaatttagtctctgaatgcagactccattagtcaatttagttcctgaatgtagactctgttaatcactttaatctttaaaattgactaacaaa 11298149  T
Q  260 gtttgcattcagggac 275  Q
    || | |||||| ||||    
T  11298150 gtcttcattcaaggac 11298165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 177 - 256
Target Start/End: Complemental strand, 31912367 - 31912288
Alignment:
Q  177 cttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaac 256  Q
    ||||||| ||||||  ||| ||||||||||||  | | ||||||||  ||||||||||||| ||| ||||||||||||||    
T  31912367 cttgaatacagactccgttagtcaatttagtcatttactgtagactctgttagtcactttagtccatgaaattgactaac 31912288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 32539429 - 32539375
Alignment:
Q  154 atactttgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtc 208  Q
    |||||| ||||||||||||| |||||||||| ||||| |||| |||| |||||||    
T  32539429 atacttcgttagtcaatttagttcttgaatgtagactatgttagtcactttagtc 32539375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 251
Target Start/End: Complemental strand, 30100780 - 30100708
Alignment:
Q  179 tgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattga 251  Q
    ||||||||||||   || |||||| ||||| || ||||||||||  ||| ||||||||| |||||||||||||    
T  30100780 tgaatgcagactccattagtcaatatagtccctgaatgtagactctgtttgtcactttagtccctgaaattga 30100708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 160 - 276
Target Start/End: Original strand, 5448287 - 5448403
Alignment:
Q  160 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacaga 259  Q
    |||||||||||||| | | || |||||||||  |||||||||||||||| || ||| |||||||| |||||||||||| | |||||||||||| ||||||    
T  5448287 tgttagtcaatttagtccctggatgcagactccgttggtcaatttagtccctgaatatagacttcattagtcactttagttcctgaaattgaccaacaga 5448386  T
Q  260 gtttgcattcagggact 276  Q
    |||| ||||||||||||    
T  5448387 gtttacattcagggact 5448403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 160 - 263
Target Start/End: Complemental strand, 10380783 - 10380680
Alignment:
Q  160 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacaga 259  Q
    |||||||||||||||| | ||||||||||||| ||| |||||||||||| || ||||||||||  ||||||||||||| |||||||||||||| |||| |    
T  10380783 tgttagtcaatttaatccctgaatgcagacttcgttagtcaatttagtccctaaatgtagactcagttagtcactttagtccctgaaattgaccaacaaa 10380684  T
Q  260 gttt 263  Q
    ||||    
T  10380683 gttt 10380680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 160 - 276
Target Start/End: Complemental strand, 18830762 - 18830646
Alignment:
Q  160 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacaga 259  Q
    |||||||| ||||| | | ||||||||||||| ||| |||||||||||| || |||||||||| | |||||||||||| |||||||||||||| ||||||    
T  18830762 tgttagtccatttagtccctgaatgcagacttcgttagtcaatttagtccctgaatgtagactccattagtcactttagtccctgaaattgaccaacaga 18830663  T
Q  260 gtttgcattcagggact 276  Q
     | | ||||||||||||    
T  18830662 atctacattcagggact 18830646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 160 - 276
Target Start/End: Complemental strand, 2634212 - 2634096
Alignment:
Q  160 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacaga 259  Q
    |||||||||||||| | | |||||||||||| |||| |||||||||||| || ||||||||||| |||| |||||||| || ||||||||||| || | |    
T  2634212 tgttagtcaatttagtccctgaatgcagactctgttcgtcaatttagtccctgaatgtagactttgttaatcactttagtcgctgaaattgaccaataaa 2634113  T
Q  260 gtttgcattcagggact 276  Q
    || | ||||||||||||    
T  2634112 gtctacattcagggact 2634096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 160 - 270
Target Start/End: Complemental strand, 5324871 - 5324761
Alignment:
Q  160 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacaga 259  Q
    |||||||||||||| ||| |||||||||||| |||| ||||||||||||  | |||||| |||  ||| ||||||||| |||||||||||||| ||||||    
T  5324871 tgttagtcaatttagttcatgaatgcagactctgttagtcaatttagtccttgaatgtaaactctgttcgtcactttagtccctgaaattgaccaacaga 5324772  T
Q  260 gtttgcattca 270  Q
    || | ||||||    
T  5324771 gtctacattca 5324761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 160 - 257
Target Start/End: Original strand, 11821814 - 11821911
Alignment:
Q  160 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaaca 257  Q
    ||||||| |||||| | | |||||||||| || ||| ||||||||||||| | ||||||||||  ||||||||||||| |||||||||||||| ||||    
T  11821814 tgttagttaatttagtccctgaatgcagatttcgttagtcaatttagtctatgaatgtagactctgttagtcactttagtccctgaaattgaccaaca 11821911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 156 - 257
Target Start/End: Complemental strand, 1387470 - 1387369
Alignment:
Q  156 actttgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaa 255  Q
    ||||||||||||| |||| ||| |||||||| ||   ||| |||||||||||  |  ||||||||||||||||||||||||| ||||| | |||||||||    
T  1387470 actttgttagtcactttagttcctgaatgcaaaccccgttagtcaatttagttccggaatgtagacttcgttagtcactttagtccctaatattgactaa 1387371  T
Q  256 ca 257  Q
    ||    
T  1387370 ca 1387369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 179 - 276
Target Start/End: Complemental strand, 22018051 - 22017954
Alignment:
Q  179 tgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacagagtttgcattcagggact 276  Q
    |||||| ||||| |||| ||| ||||||||||| |||||| ||| ||||| |||||||| ||| |||||||||| |||||| | | ||||||||||||    
T  22018051 tgaatgtagactatgttagtctatttagtctctgaatgtatactccgttaatcactttagtccttgaaattgaccaacagaatatacattcagggact 22017954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 160 - 276
Target Start/End: Original strand, 2063237 - 2063353
Alignment:
Q  160 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacaga 259  Q
    |||||||||||||| |   |||||||| |||  ||| |||||||||||| || |||||||| || ||||||||||||| ||  | |||||||| ||||||    
T  2063237 tgttagtcaatttagtctctgaatgcaaactccgttagtcaatttagtccctaaatgtagaatttgttagtcactttagtctttaaaattgaccaacaga 2063336  T
Q  260 gtttgcattcagggact 276  Q
    || | ||||||||||||    
T  2063337 gtctacattcagggact 2063353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 160 - 236
Target Start/End: Original strand, 3370056 - 3370132
Alignment:
Q  160 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcacttt 236  Q
    |||||||||||||| | | ||||||||||||| ||| ||||||||||||||| ||||||||||   |||||||||||    
T  3370056 tgttagtcaatttagtccctgaatgcagacttcgttagtcaatttagtctcttaatgtagactctattagtcacttt 3370132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 246
Target Start/End: Complemental strand, 1387511 - 1387444
Alignment:
Q  179 tgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaa 246  Q
    |||||||||||| |||| |||||||||||| || ||||||||||| ||||||||||||| | ||||||    
T  1387511 tgaatgcagactctgttagtcaatttagtcgctgaatgtagactttgttagtcactttagttcctgaa 1387444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 261
Target Start/End: Original strand, 9826717 - 9826824
Alignment:
Q  154 atactttgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgact 253  Q
    ||||| |||||||||| ||| |   ||||||||||||| |||  |||||||| || || ||| ||||||  ||||||||| ||||||| |||||||||||    
T  9826717 atactatgttagtcaacttagtatctgaatgcagacttcgttaatcaatttaatccctgaatttagactcagttagtcacattaatccttgaaattgact 9826816  T
Q  254 aacagagt 261  Q
    ||||||||    
T  9826817 aacagagt 9826824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 160 - 246
Target Start/End: Complemental strand, 37695120 - 37695034
Alignment:
Q  160 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaa 246  Q
    ||||||||||||||||  ||||||||||||| |||| ||||||||| || || |||| ||||  ||||||||| |||| ||||||||    
T  37695120 tgttagtcaatttaatcgttgaatgcagactctgttagtcaatttaatccctaaatgcagaccccgttagtcaatttagtccctgaa 37695034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 257
Target Start/End: Complemental strand, 30471006 - 30470909
Alignment:
Q  160 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaaca 257  Q
    ||||| |||||||| | | ||||||||||||  |||  |||||||||||  | ||||||||||  ||||||||||||| |||||||||||||| ||||    
T  30471006 tgttaatcaatttagtccctgaatgcagactccgttaatcaatttagtcattgaatgtagactctgttagtcactttagtccctgaaattgaccaaca 30470909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 162 - 258
Target Start/End: Original strand, 18500691 - 18500787
Alignment:
Q  162 ttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacag 258  Q
    |||| ||||||||| | |||||| ||||| |||| |||||||||||| || ||| ||||||  |||| |||||||| || ||||||||||| |||||    
T  18500691 ttagccaatttaatccctgaatgtagactctgttagtcaatttagtccctgaatttagactctgttaatcactttagtctctgaaattgaccaacag 18500787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 257
Target Start/End: Complemental strand, 10757739 - 10757661
Alignment:
Q  179 tgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaaca 257  Q
    ||||||||||||  ||| |||||||||||| || ||||||||||  |||| ||||| |||||||||| |||||| ||||    
T  10757739 tgaatgcagactccgttagtcaatttagtccctgaatgtagactctgttaatcactataatccctgagattgaccaaca 10757661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 257
Target Start/End: Complemental strand, 10970910 - 10970832
Alignment:
Q  179 tgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaaca 257  Q
    ||||||||||||  ||| |||||||||||| || ||||||||||  |||| ||||| |||||||||| |||||| ||||    
T  10970910 tgaatgcagactccgttagtcaatttagtccctgaatgtagactctgttaatcactataatccctgagattgaccaaca 10970832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 263
Target Start/End: Original strand, 47144781 - 47144883
Alignment:
Q  161 gttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacagag 260  Q
    ||||||||||||| | |||||||  |||||  |||  ||||||||||  || |||| ||||| |||| ||||||||| ||| ||||||||||||||| ||    
T  47144781 gttagtcaatttagtccttgaataaagactccgttaatcaatttagttcctgaatgcagactccgttggtcactttagtccttgaaattgactaacaaag 47144880  T
Q  261 ttt 263  Q
    |||    
T  47144881 ttt 47144883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 276
Target Start/End: Complemental strand, 18836466 - 18836351
Alignment:
Q  160 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacaga 259  Q
    |||||||| ||||| | | ||||||||||||  ||| |||| ||||||| || |||||||||| | |||||||||||| ||| | |||||||| |||||     
T  18836466 tgttagtccatttagtccctgaatgcagactccgttagtca-tttagtccctgaatgtagactccattagtcactttagtccataaaattgaccaacagc 18836368  T
Q  260 gtttgcattcagggact 276  Q
    |||  |||| |||||||    
T  18836367 gttaacatttagggact 18836351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 276
Target Start/End: Complemental strand, 37695088 - 37694972
Alignment:
Q  160 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacaga 259  Q
    |||||||||||||||| | | |||||||||   ||| |||||||||||| || ||| ||||||   |||||||||||| || || |||||||| |||| |    
T  37695088 tgttagtcaatttaatccctaaatgcagaccccgttagtcaatttagtccctgaatatagactctattagtcactttagtcacttaaattgaccaacaca 37694989  T
Q  260 gtttgcattcagggact 276  Q
     | | ||||||||||||    
T  37694988 atctacattcagggact 37694972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 160 - 259
Target Start/End: Complemental strand, 2232558 - 2232461
Alignment:
Q  160 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacaga 259  Q
    |||||||||||||||| | ||  || ||||| |||| | |||||||||| || |||||||||||  ||| |||||||| |||||||||||||| ||||||    
T  2232558 tgttagtcaatttaatccctggttg-agactctgttagccaatttagtccctgaatgtagacttt-ttaatcactttagtccctgaaattgaccaacaga 2232461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 179 - 270
Target Start/End: Complemental strand, 8951189 - 8951098
Alignment:
Q  179 tgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacagagtttgcattca 270  Q
    |||||| ||| |||||| |||||||||||  || |||||||||||||||||||| |||| |  || |||||||| ||| |||| | ||||||    
T  8951189 tgaatgtagattttgttagtcaatttagttccttaatgtagacttcgttagtcattttagtttcttaaattgaccaactgagtctacattca 8951098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 246
Target Start/End: Complemental strand, 18830777 - 18830708
Alignment:
Q  177 cttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaa 246  Q
    |||||||| ||| | |||| ||| |||||||| || |||| ||||||||||||||| |||| ||||||||    
T  18830777 cttgaatgtagattctgttagtccatttagtccctgaatgcagacttcgttagtcaatttagtccctgaa 18830708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 252
Target Start/End: Original strand, 30378852 - 30378924
Alignment:
Q  179 tgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgac 252  Q
    |||||||||||| |||| ||||||| |||| || ||| |||||| |||||||||||||| |  |||||||||||    
T  30378852 tgaatgcagactctgttagtcaattcagtccctgaat-tagactccgttagtcactttagtgtctgaaattgac 30378924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 257
Target Start/End: Complemental strand, 47943640 - 47943539
Alignment:
Q  156 actttgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaa 255  Q
    |||| ||||||||||||| |||||||||||||     ||| ||||||||| || || ||||||||||  |||| ||||| || ||||| |||||||| ||    
T  47943640 acttggttagtcaatttagttcttgaatgcaggaaccgttagtcaatttaatccctgaatgtagactatgttaatcactatagtccctaaaattgaccaa 47943541  T
Q  256 ca 257  Q
    ||    
T  47943540 ca 47943539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 237
Target Start/End: Complemental strand, 55382748 - 55382667
Alignment:
Q  156 actttgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcacttta 237  Q
    |||||||||||||||||  | | | |||||||| |  ||| |||||||||||| ||  ||||||||| ||||||||||||||    
T  55382748 actttgttagtcaattttgtccctaaatgcagattccgttagtcaatttagtccctggatgtagactccgttagtcacttta 55382667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 237
Target Start/End: Original strand, 3370045 - 3370101
Alignment:
Q  181 aatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcacttta 237  Q
    |||| ||||| |||| |||||||||||| || |||| ||||||||||||||| ||||    
T  3370045 aatgtagactctgttagtcaatttagtccctgaatgcagacttcgttagtcaattta 3370101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0407 (Bit Score: 60; Significance: 1e-25; HSPs: 6)
Name: scaffold0407
Description:

Target: scaffold0407; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 161 - 272
Target Start/End: Complemental strand, 1022 - 911
Alignment:
Q  161 gttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacagag 260  Q
    ||||||||||||| | | ||||||||||||| ||| ||||||||| || || ||||||||||| ||||||||||||| ||||||||||||||||| ||||    
T  1022 gttagtcaatttagtccctgaatgcagacttcgttagtcaatttaatccctgaatgtagactttgttagtcactttagtccctgaaattgactaatagag 923  T
Q  261 tttgcattcagg 272  Q
    | | ||||||||    
T  922 tctacattcagg 911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0407; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 161 - 272
Target Start/End: Complemental strand, 7486 - 7375
Alignment:
Q  161 gttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacagag 260  Q
    ||||||||||||| | | ||||||||||||| ||| ||||||||| || || ||||||||||| ||||||||||||| ||||||||||||||||| ||||    
T  7486 gttagtcaatttagtccctgaatgcagacttcgttagtcaatttaatccctgaatgtagactttgttagtcactttagtccctgaaattgactaatagag 7387  T
Q  261 tttgcattcagg 272  Q
    | | ||||||||    
T  7386 tctacattcagg 7375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0407; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 246
Target Start/End: Complemental strand, 1059 - 969
Alignment:
Q  156 actttgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaa 246  Q
    ||||| ||| |||||||| | | |||||||||| || ||| |||||||||||| || |||| ||||||||||||||| |||||||||||||    
T  1059 actttattattcaatttagtccctgaatgcagatttcgttagtcaatttagtccctgaatgcagacttcgttagtcaatttaatccctgaa 969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0407; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 246
Target Start/End: Complemental strand, 7523 - 7433
Alignment:
Q  156 actttgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaa 246  Q
    ||||| ||| |||||||| | | |||||||||| || ||| |||||||||||| || |||| ||||||||||||||| |||||||||||||    
T  7523 actttattattcaatttagtccctgaatgcagatttcgttagtcaatttagtccctgaatgcagacttcgttagtcaatttaatccctgaa 7433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0407; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 995 - 943
Alignment:
Q  156 actttgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtc 208  Q
    |||| ||||||||||||||| | |||||| |||||||||| |||| |||||||    
T  995 acttcgttagtcaatttaatccctgaatgtagactttgttagtcactttagtc 943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0407; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 7459 - 7407
Alignment:
Q  156 actttgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtc 208  Q
    |||| ||||||||||||||| | |||||| |||||||||| |||| |||||||    
T  7459 acttcgttagtcaatttaatccctgaatgtagactttgttagtcactttagtc 7407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 156 - 276
Target Start/End: Complemental strand, 190370 - 190250
Alignment:
Q  156 actttgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaa 255  Q
    |||||||||||||||||| ||| ||||| |||||| |||| |||||||||||| || |||||| |||  |||| ||| ||||||||||||||||||| ||    
T  190370 actttgttagtcaatttagttcctgaatacagactctgttagtcaatttagtccctaaatgtaaactatgttaatcaatttaatccctgaaattgaccaa 190271  T
Q  256 cagagtttgcattcagggact 276  Q
    |||||| | ||||||| ||||    
T  190270 cagagtctacattcagagact 190250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 8e-24; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 160 - 276
Target Start/End: Original strand, 31253995 - 31254111
Alignment:
Q  160 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacaga 259  Q
    |||||||||||||| | | |||||||||||| |||| |||||||||||| || |||||||| || ||||||||||||||||||||||||| || ||| ||    
T  31253995 tgttagtcaatttagtccctgaatgcagactctgttagtcaatttagtccctaaatgtagattttgttagtcactttaatccctgaaattaaccaacgga 31254094  T
Q  260 gtttgcattcagggact 276  Q
    || | |||||| |||||    
T  31254095 gtctacattcaaggact 31254111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 160 - 276
Target Start/End: Original strand, 35202689 - 35202806
Alignment:
Q  160 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctc-tcaatgtagacttcgttagtcactttaatccctgaaattgactaacag 258  Q
    |||||||||||||| ||| |||||||||| | |||| |||||||||||| | | |||||||||| |||||||||||||| | |||||||||||| |||||    
T  35202689 tgttagtcaatttagttcctgaatgcagattctgttagtcaatttagtcccctgaatgtagactccgttagtcactttagttcctgaaattgaccaacag 35202788  T
Q  259 agtttgcattcagggact 276  Q
    |||   ||||||||||||    
T  35202789 agtaaacattcagggact 35202806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 160 - 276
Target Start/End: Complemental strand, 23976279 - 23976163
Alignment:
Q  160 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacaga 259  Q
    ||||||||||||||   | ||||||||||||  |||||||||||||| | || ||||||||    ||||||||||||| |||||||||||||||||||||    
T  23976279 tgttagtcaatttagcccctgaatgcagactccgttggtcaatttagcccctgaatgtagatcatgttagtcactttactccctgaaattgactaacaga 23976180  T
Q  260 gtttgcattcagggact 276  Q
    || | ||||||||||||    
T  23976179 gtctacattcagggact 23976163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 160 - 276
Target Start/End: Complemental strand, 22469620 - 22469505
Alignment:
Q  160 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacaga 259  Q
    |||||||||||||||| | ||||| || |||   || |||||||||||| || ||| || ||| |||||||||| |||||||||||||||||| ||||||    
T  22469620 tgttagtcaatttaatccctgaattcaaactccattagtcaatttagtccctgaat-taaactccgttagtcaccttaatccctgaaattgaccaacaga 22469522  T
Q  260 gtttgcattcagggact 276  Q
    || ||||||||||||||    
T  22469521 gtctgcattcagggact 22469505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 156 - 276
Target Start/End: Complemental strand, 25149430 - 25149310
Alignment:
Q  156 actttgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaa 255  Q
    |||||||||||||||||| |   |||||||||||| |||| ||||| |||||| || || ||||||  |||| ||||||||| ||| |||||||||| ||    
T  25149430 actttgttagtcaatttagtctctgaatgcagactctgttagtcaagttagtccctgaacgtagacaccgttcgtcactttagtccttgaaattgaccaa 25149331  T
Q  256 cagagtttgcattcagggact 276  Q
    |||||| | ||||||||||||    
T  25149330 cagagtctacattcagggact 25149310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 160 - 255
Target Start/End: Complemental strand, 4289113 - 4289018
Alignment:
Q  160 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaa 255  Q
    |||||||||||||| |   | |||||||||| ||||  |||||||||||| | ||||||||||  |||||||||||||||||||||||||||||||    
T  4289113 tgttagtcaatttagtctctaaatgcagactatgttaatcaatttagtctttgaatgtagactctgttagtcactttaatccctgaaattgactaa 4289018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 160 - 255
Target Start/End: Complemental strand, 41358870 - 41358775
Alignment:
Q  160 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaa 255  Q
    ||||| |||||||| | | |||||||||||||| || || | ||| |||||| ||||||||||| ||||||||||||| || ||||||||||||||    
T  41358870 tgttaatcaatttagtccatgaatgcagactttatttgttacttttgtctctgaatgtagactttgttagtcactttagtctctgaaattgactaa 41358775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 270
Target Start/End: Complemental strand, 37543984 - 37543870
Alignment:
Q  156 actttgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaa 255  Q
    |||||||||||||||||||| | |||||||||| |  ||| || ||||||||| || ||| |||||| ||||| |||||||| ||| |||||||||| ||    
T  37543984 actttgttagtcaatttaatccctgaatgcagattccgttagttaatttagtccctgaatatagactccgttaatcactttagtccatgaaattgaccaa 37543885  T
Q  256 cagagtttgcattca 270  Q
     | ||||| ||||||    
T  37543884 taaagtttacattca 37543870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 156 - 261
Target Start/End: Original strand, 18324084 - 18324189
Alignment:
Q  156 actttgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaa 255  Q
    ||||| |||||||||||| ||| |||||||| |||  ||| ||||||||||||  | |||||||||| |||||||||||||| | | |||||||||| |     
T  18324084 actttattagtcaatttagttcctgaatgcaaactccgttagtcaatttagtccttaaatgtagactccgttagtcactttagttcatgaaattgaccag 18324183  T
Q  256 cagagt 261  Q
    ||||||    
T  18324184 cagagt 18324189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 156 - 224
Target Start/End: Complemental strand, 29585642 - 29585574
Alignment:
Q  156 actttgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttc 224  Q
    ||||||||| |||||||| | | ||||||||||||||||| |||||||||||| || ||||||||||||    
T  29585642 actttgttattcaatttagtccctgaatgcagactttgttagtcaatttagtccctgaatgtagacttc 29585574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 276
Target Start/End: Complemental strand, 12107012 - 12106939
Alignment:
Q  203 ttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacagagtttgcattcagggact 276  Q
    |||||| || |||||||||| |||| ||||||||| |||||||||||||| |||||||| | ||| ||||||||    
T  12107012 ttagtccctaaatgtagactgcgttcgtcactttagtccctgaaattgaccaacagagtctacatccagggact 12106939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 160 - 240
Target Start/End: Complemental strand, 24609214 - 24609134
Alignment:
Q  160 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatc 240  Q
    |||||||||||||| ||||| |||||||||| ||||  | |||||||||||| ||||||||||   |||||| ||||||||    
T  24609214 tgttagtcaatttagttcttaaatgcagactctgttaattaatttagtctctgaatgtagactcaattagtcgctttaatc 24609134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 242
Target Start/End: Original strand, 21124420 - 21124500
Alignment:
Q  162 ttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccc 242  Q
    |||||||||||| | | ||||||||||||| ||| |||||||||||| |  | |||||||| ||||||||| |||| ||||    
T  21124420 ttagtcaatttagtccctgaatgcagacttcgttagtcaatttagtcccctagtgtagactccgttagtcaatttagtccc 21124500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 179 - 246
Target Start/End: Complemental strand, 25149439 - 25149372
Alignment:
Q  179 tgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaa 246  Q
    |||||| |||||||||| ||||||||||||||| |||| |||||  ||||||||  ||| ||||||||    
T  25149439 tgaatgtagactttgttagtcaatttagtctctgaatgcagactctgttagtcaagttagtccctgaa 25149372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 179 - 246
Target Start/End: Complemental strand, 29585651 - 29585584
Alignment:
Q  179 tgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaa 246  Q
    |||||| ||||||||||  ||||||||||| || |||| |||||| |||||||| |||| ||||||||    
T  29585651 tgaatgtagactttgttattcaatttagtccctgaatgcagactttgttagtcaatttagtccctgaa 29585584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 279
Target Start/End: Complemental strand, 31254039 - 31254005
Alignment:
Q  245 aaattgactaacagagtttgcattcagggactaaa 279  Q
    ||||||||||||||||| |||||||||||||||||    
T  31254039 aaattgactaacagagtctgcattcagggactaaa 31254005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 261
Target Start/End: Complemental strand, 37494465 - 37494396
Alignment:
Q  192 tgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacagagt 261  Q
    |||| |||||||||||| || |||| ||||||| ||||||| || | ||||| |||||||| ||||||||    
T  37494465 tgttagtcaatttagtccctgaatgcagacttcattagtcaattcactccctaaaattgaccaacagagt 37494396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 8e-24; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 160 - 276
Target Start/End: Original strand, 37608063 - 37608178
Alignment:
Q  160 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacaga 259  Q
    |||||||||||||| | |||||||||||||| |||| ||||||||||||  | |||||||||| |||||||||||||  |||||||||||||| |||||     
T  37608063 tgttagtcaatttagtccttgaatgcagactctgttagtcaatttagtccttgaatgtagactccgttagtcactttggtccctgaaattgaccaacag- 37608161  T
Q  260 gtttgcattcagggact 276  Q
     ||| ||||||||||||    
T  37608162 ttttacattcagggact 37608178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 156 - 276
Target Start/End: Original strand, 50335528 - 50335648
Alignment:
Q  156 actttgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaa 255  Q
    |||||||||||||||||| | | ||||||||||||  ||| |||||||||||| || |||||||||| || || |||||||| ||||| |||||||| ||    
T  50335528 actttgttagtcaatttagtccctgaatgcagactccgttcgtcaatttagtccctgaatgtagactccgctaatcactttagtccctaaaattgaccaa 50335627  T
Q  256 cagagtttgcattcagggact 276  Q
    |||||| | ||||||||||||    
T  50335628 cagagtctacattcagggact 50335648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 160 - 276
Target Start/End: Original strand, 13735536 - 13735653
Alignment:
Q  160 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattga-ctaacag 258  Q
    |||||||||||||| |   ||||||||||||  ||| ||||||||||||  | |||||||||| |||||||||||||| ||||||||||||| | |||||    
T  13735536 tgttagtcaatttagtctctgaatgcagactccgttagtcaatttagtcaataaatgtagactccgttagtcactttagtccctgaaattgatcaaacag 13735635  T
Q  259 agtttgcattcagggact 276  Q
    ||| | ||||||||||||    
T  13735636 agtctacattcagggact 13735653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 279
Target Start/End: Original strand, 32374110 - 32374144
Alignment:
Q  245 aaattgactaacagagtttgcattcagggactaaa 279  Q
    |||||||||||||||||||||||||||||||||||    
T  32374110 aaattgactaacagagtttgcattcagggactaaa 32374144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 179 - 246
Target Start/End: Original strand, 50335519 - 50335586
Alignment:
Q  179 tgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaa 246  Q
    |||||| |||||||||| |||||||||||| || |||| ||||| |||| |||| |||| ||||||||    
T  50335519 tgaatgtagactttgttagtcaatttagtccctgaatgcagactccgttcgtcaatttagtccctgaa 50335586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 237
Target Start/End: Original strand, 13735525 - 13735581
Alignment:
Q  181 aatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcacttta 237  Q
    |||| ||||| |||| ||||||||||||||| |||| ||||| ||||||||| ||||    
T  13735525 aatgtagactctgttagtcaatttagtctctgaatgcagactccgttagtcaattta 13735581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 222
Target Start/End: Complemental strand, 32374152 - 32374092
Alignment:
Q  162 ttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagact 222  Q
    |||||||||||| | | |||||||| ||| |||| |||||||||||| || ||||||||||    
T  32374152 ttagtcaatttagtccctgaatgcaaactctgttagtcaatttagtccctgaatgtagact 32374092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 160 - 259
Target Start/End: Original strand, 31820005 - 31820104
Alignment:
Q  160 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacaga 259  Q
    |||||||| ||||| | |||||||||||||||| || ||||||||||||||| |||||| ||| ||||| |||||||| ||||| |||||||||||||||    
T  31820005 tgttagtccatttagtccttgaatgcagactttcttagtcaatttagtctctgaatgtatactccgttaatcactttagtccctaaaattgactaacaga 31820104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 179 - 276
Target Start/End: Complemental strand, 32092928 - 32092831
Alignment:
Q  179 tgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacagagtttgcattcagggact 276  Q
    |||||| ||||| |||| |||||||||||| || ||||||||||||||||||||||||| | ||||| |||||| |||||||| | ||||||||||||    
T  32092928 tgaatgtagactctgttagtcaatttagtccctgaatgtagacttcgttagtcactttagttcctgagattgacaaacagagtctacattcagggact 32092831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 172 - 270
Target Start/End: Original strand, 17914076 - 17914174
Alignment:
Q  172 taattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacagagtttgcattca 270  Q
    |||| |||||||| ||| |||||| |||||||||| | || |||||||| || |||||||||||||||| || ||||||||||| ||||| | ||||||    
T  17914076 taatccttgaatgtagattttgttagtcaatttagaccctaaatgtagattttgttagtcactttaatcactaaaattgactaatagagtctacattca 17914174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 270
Target Start/End: Complemental strand, 39598699 - 39598585
Alignment:
Q  156 actttgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaa 255  Q
    |||||||| ||||||||| |   |||||| | |||  ||| |||||||||||| || |||||||||| |||||||||||||| ||||| |||||||||||    
T  39598699 actttgttggtcaatttagtcgctgaatgtatactccgttagtcaatttagtccctgaatgtagactccgttagtcactttagtccctaaaattgactaa 39598600  T
Q  256 cagagtttgcattca 270  Q
    || ||| | ||||||    
T  39598599 caaagtctacattca 39598585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 160 - 276
Target Start/End: Original strand, 22092951 - 22093067
Alignment:
Q  160 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacaga 259  Q
    ||||||||| |||| ||| ||||||||||||   || |||||||||||| || ||| |||||| |||| ||||||||| |||||||| ||||| ||||||    
T  22092951 tgttagtcagtttagttcctgaatgcagactccattcgtcaatttagtccctgaatatagactccgtttgtcactttagtccctgaatttgaccaacaga 22093050  T
Q  260 gtttgcattcagggact 276  Q
     | | ||||||| ||||    
T  22093051 atctacattcagagact 22093067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 246
Target Start/End: Complemental strand, 39598708 - 39598641
Alignment:
Q  179 tgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaa 246  Q
    |||||| ||||||||||||||||||||||| || |||||| ||| ||||||||| |||| ||||||||    
T  39598708 tgaatgtagactttgttggtcaatttagtcgctgaatgtatactccgttagtcaatttagtccctgaa 39598641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 176 - 246
Target Start/End: Original strand, 8219214 - 8219284
Alignment:
Q  176 tcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaa 246  Q
    ||||||||| ||||| |||| ||||||||||| ||| |||| ||||| ||||||||| |||||||||||||    
T  8219214 tcttgaatgtagactctgttagtcaatttagtttctgaatgcagactccgttagtcaatttaatccctgaa 8219284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 160 - 276
Target Start/End: Complemental strand, 24007068 - 24006952
Alignment:
Q  160 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacaga 259  Q
    |||||||||||||| | | |||||||||| |  |||| ||||| ||||  || ||||||||||  |||| ||| |||| || |||||||||| |||||||    
T  24007068 tgttagtcaatttagtccatgaatgcagattccgttgatcaatgtagtacctgaatgtagactctgttaatcattttagtctctgaaattgagtaacaga 24006969  T
Q  260 gtttgcattcagggact 276  Q
    || | ||||||||||||    
T  24006968 gtctacattcagggact 24006952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 257
Target Start/End: Complemental strand, 31499538 - 31499441
Alignment:
Q  160 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaaca 257  Q
    ||||||||| |||| ||  ||||||||||||  ||| ||||||||||||  | |||||||||||  || ||||||||  |||||||||||||| ||||    
T  31499538 tgttagtcattttagtttctgaatgcagactccgttagtcaatttagtccttgaatgtagactttatttgtcactttggtccctgaaattgaccaaca 31499441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 234
Target Start/End: Original strand, 8219230 - 8219304
Alignment:
Q  160 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcact 234  Q
    |||||||||||||| ||  ||||||||||||  ||| ||||||||| || || ||||| |||| |||||||||||    
T  8219230 tgttagtcaatttagtttctgaatgcagactccgttagtcaatttaatccctgaatgtggactccgttagtcact 8219304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 160 - 257
Target Start/End: Complemental strand, 19295469 - 19295372
Alignment:
Q  160 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaaca 257  Q
    |||||||||||||| | | |||||||||||||  || |||||||||||| || |||||||||| |||| ||||||||| |||||||||||||||||||    
T  19295469 tgttagtcaatttagtccctgaatgcagacttcattagtcaatttagtccctgaatgtagactccgttggtcactttagtccctgaaattgactaaca 19295372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 154 - 261
Target Start/End: Complemental strand, 21222659 - 21222552
Alignment:
Q  154 atactttgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgact 253  Q
    ||||| |||||||||| ||| |   ||||||||||||| ||| |||||||||||| || ||||||||||  ||||||||| ||||||| |||||||||||    
T  21222659 atactatgttagtcaacttagtctctgaatgcagacttcgttagtcaatttagtccctgaatgtagactcagttagtcacattaatccttgaaattgact 21222560  T
Q  254 aacagagt 261  Q
    ||||||||    
T  21222559 aacagagt 21222552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 160 - 257
Target Start/End: Original strand, 25089243 - 25089340
Alignment:
Q  160 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaaca 257  Q
    |||||||||||||| |  |||||||||||||   || |||||||||||| || |||||||||||| |||||||||||| ||| |||||||||| ||||    
T  25089243 tgttagtcaatttagtcattgaatgcagactccattagtcaatttagtccctgaatgtagacttcattagtcactttagtccatgaaattgaccaaca 25089340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 158 - 276
Target Start/End: Complemental strand, 10672808 - 10672690
Alignment:
Q  158 tttgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaaca 257  Q
    ||||||| |||||||| |   |||||||| | || ||| |||||||||||| || |||||||||||||||||||||| || | ||||||||| || ||||    
T  10672808 tttgttaatcaatttagtctctgaatgcatatttcgttagtcaatttagtccctgaatgtagacttcgttagtcactatagttcctgaaatttaccaaca 10672709  T
Q  258 gagtttgcattcagggact 276  Q
     ||| | ||||||||||||    
T  10672708 tagtctacattcagggact 10672690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 160 - 276
Target Start/End: Original strand, 13536651 - 13536768
Alignment:
Q  160 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctc-tcaatgtagacttcgttagtcactttaatccctgaaattgactaacag 258  Q
    |||||||||||||| | | ||||||||||||  ||| |||||||||| | | | ||||||||||  ||||||||||||| |||||||||| ||| || ||    
T  13536651 tgttagtcaatttagtccctgaatgcagactccgttagtcaatttagccccctgaatgtagactctgttagtcactttagtccctgaaatggaccaatag 13536750  T
Q  259 agtttgcattcagggact 276  Q
    ||| | ||||||||||||    
T  13536751 agtctacattcagggact 13536768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 160 - 252
Target Start/End: Original strand, 10862104 - 10862196
Alignment:
Q  160 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgac 252  Q
    |||||||||||| ||| | |||| |||||||  ||| |||||||||||| || ||| ||||||  ||| ||||||||| ||||||||||||||    
T  10862104 tgttagtcaattcaatccctgaaggcagactccgttagtcaatttagtccctgaatatagactctgttcgtcactttagtccctgaaattgac 10862196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 246
Target Start/End: Complemental strand, 19295482 - 19295415
Alignment:
Q  179 tgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaa 246  Q
    |||||||||||| |||| |||||||||||| || |||| ||||||| ||||||| |||| ||||||||    
T  19295482 tgaatgcagactctgttagtcaatttagtccctgaatgcagacttcattagtcaatttagtccctgaa 19295415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 276
Target Start/End: Original strand, 26705156 - 26705235
Alignment:
Q  197 gtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacagagtttgcattcagggact 276  Q
    |||||||||||| || ||||||||   |||||||||||||| |||||||||||||| ||||  || | ||||||||||||    
T  26705156 gtcaatttagtccctgaatgtagaacccgttagtcactttagtccctgaaattgaccaacaacgtctacattcagggact 26705235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 237
Target Start/End: Complemental strand, 12651269 - 12651194
Alignment:
Q  161 gttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcacttta 237  Q
    ||||||||||||  | | ||||||| |||| |||| |||||||||||||||  |||||||||| |||||||||||||    
T  12651269 gttagtcaatttggtccctgaatgccgactctgttagtcaatttagtctct-gatgtagactttgttagtcacttta 12651194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 179 - 246
Target Start/End: Complemental strand, 21222666 - 21222599
Alignment:
Q  179 tgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaa 246  Q
    |||||| | ||| |||| ||||| ||||||||| |||| ||||||||||||||| |||| ||||||||    
T  21222666 tgaatgtatactatgttagtcaacttagtctctgaatgcagacttcgttagtcaatttagtccctgaa 21222599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 277
Target Start/End: Original strand, 19295457 - 19295489
Alignment:
Q  245 aaattgactaacagagtttgcattcagggacta 277  Q
    ||||||||||||||||| |||||||||||||||    
T  19295457 aaattgactaacagagtctgcattcagggacta 19295489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 246
Target Start/End: Original strand, 26705089 - 26705173
Alignment:
Q  162 ttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaa 246  Q
    |||||||||||| | | |||||||||| || |||  ||||||||||| || ||| |||| | ||||||||| |||| ||||||||    
T  26705089 ttagtcaatttagtccctgaatgcagatttcgttaatcaatttagtccctgaatatagaatccgttagtcaatttagtccctgaa 26705173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 161 - 274
Target Start/End: Original strand, 23984 - 24097
Alignment:
Q  161 gttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacagag 260  Q
    ||||||||||||| | | |||||||||||| |||||||||||||||||  | |||||||||||  || ||||||||  ||| |||||||||| ||||||     
T  23984 gttagtcaatttagtccctgaatgcagactctgttggtcaatttagtccttgaatgtagactttattcgtcacttttgtccatgaaattgaccaacagaa 24083  T
Q  261 tttgcattcaggga 274  Q
    | | ||||||||||    
T  24084 tctacattcaggga 24097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 160 - 261
Target Start/End: Original strand, 314169 - 314270
Alignment:
Q  160 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacaga 259  Q
    |||||||||||||| | | ||||||||||||  ||| |||||||||||| || |||||||| |  ||||||||||||| ||||||||||| || ||||||    
T  314169 tgttagtcaatttagtccctgaatgcagactccgttagtcaatttagtccctgaatgtagagtctgttagtcactttagtccctgaaattaaccaacaga 314268  T
Q  260 gt 261  Q
    ||    
T  314269 gt 314270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 246
Target Start/End: Original strand, 314158 - 314223
Alignment:
Q  181 aatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaa 246  Q
    |||| ||||| |||| |||||||||||| || |||| ||||| ||||||||| |||| ||||||||    
T  314158 aatgtagactctgttagtcaatttagtccctgaatgcagactccgttagtcaatttagtccctgaa 314223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 198 - 273
Target Start/End: Complemental strand, 59855 - 59780
Alignment:
Q  198 tcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacagagtttgcattcaggg 273  Q
    ||||||||||| || |||| ||||| ||||||||| |||| ||||||||||||||||||||||| | |||||||||    
T  59855 tcaatttagtccctgaatgcagactccgttagtcaatttagtccctgaaattgactaacagagtctacattcaggg 59780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 154 - 261
Target Start/End: Original strand, 57534 - 57641
Alignment:
Q  154 atactttgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgact 253  Q
    ||||| |||||||||| ||| |   ||||||||||||| |||  ||||||||||| || ||| ||||||  ||||||||| ||||||| |||||||||||    
T  57534 atactatgttagtcaacttagtatctgaatgcagacttcgttaatcaatttagtccctgaatttagactcagttagtcacattaatccttgaaattgact 57633  T
Q  254 aacagagt 261  Q
    ||||||||    
T  57634 aacagagt 57641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1300 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold1300
Description:

Target: scaffold1300; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 261
Target Start/End: Original strand, 1460 - 1542
Alignment:
Q  179 tgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacagagt 261  Q
    ||||||||||||| ||| || ||||||||| || ||||||||||   |||||||| ||||||| |||||||||||||||||||    
T  1460 tgaatgcagacttcgttagttaatttagtccctgaatgtagactcaattagtcacattaatccttgaaattgactaacagagt 1542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 261
Target Start/End: Original strand, 127889 - 127996
Alignment:
Q  154 atactttgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgact 253  Q
    ||||| |||||||||| ||| |   ||||||||||||| |||  |||||||| || |  ||| ||||||  ||||||||| ||||||| |||||||||||    
T  127889 atactatgttagtcaacttagtatctgaatgcagacttcgttaatcaatttaatcccagaatttagactcagttagtcacattaatccttgaaattgact 127988  T
Q  254 aacagagt 261  Q
    ||||||||    
T  127989 aacagagt 127996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 261
Target Start/End: Complemental strand, 27624 - 27576
Alignment:
Q  213 aatgtagacttcgttagtcactttaatccctgaaattgactaacagagt 261  Q
    ||||||||||||||| ||||||||| ||| |||||||||| ||||||||    
T  27624 aatgtagacttcgttcgtcactttagtccttgaaattgaccaacagagt 27576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 261
Target Start/End: Original strand, 11683 - 11765
Alignment:
Q  179 tgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacagagt 261  Q
    |||||| ||||| |||| | ||||||| ||||| |||||| | |  ||||||||||||| ||||| ||||||||||| |||||    
T  11683 tgaatgtagactatgttaggcaatttaatctctgaatgtatattctgttagtcactttagtccctaaaattgactaagagagt 11765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 279
Target Start/End: Complemental strand, 72049 - 72015
Alignment:
Q  245 aaattgactaacagagtttgcattcagggactaaa 279  Q
    ||||||||||||| |||||||||||||||||||||    
T  72049 aaattgactaacaaagtttgcattcagggactaaa 72015  T

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Target: scaffold0066 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 257
Target Start/End: Original strand, 15456 - 15553
Alignment:
Q  160 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaaca 257  Q
    ||||||||||||||||   |||||| |||||  ||| | ||||||||||||| |||||||| |  || ||||  |||| | |||||||||||||||||    
T  15456 tgttagtcaatttaatctctgaatgtagactccgttagccaatttagtctctgaatgtagattctgtcagtcgttttagtacctgaaattgactaaca 15553  T

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