View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18374_low_26 (Length: 307)
Name: NF18374_low_26
Description: NF18374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18374_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 29206396 - 29206130
Alignment:
| Q |
1 |
acagttccaagagaatcatgcattcacatgatgagtagcaagtgctggagctgcacctctggcaatggattttacaacatgcaccaatgtggtcatcaag |
100 |
Q |
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| T |
29206396 |
acagttccaagagaatcatgcattcacatgatgagtagcaagtgctggagctgcacctctggcaatggattttacaacatgcaccaatgtggtcatcaag |
29206297 |
T |
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| Q |
101 |
ctcttaacaaccccattaaatagaagctttatacagttgcgaagagaagcatctataatgtcacattaatttcatgcatgtt----------------at |
184 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
29206296 |
ctcttaacaaccccattaaatagaagctttatacagttgcgaagagaagcatctataatgtcacattaatttcatgcatgttgtacactatccatgccat |
29206197 |
T |
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| Q |
185 |
gccatagagagaaaacttgagagcttttgtaccatatagcctagctccacttaattagacggcgaga |
251 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29206196 |
gccatagagagaaaacttaagagcttttgtaccatatagcctagctccacttaattagacggcgaga |
29206130 |
T |
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Back To:
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Target: chr4 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 38379667 - 38379783
Alignment:
| Q |
1 |
acagttccaagagaatcatgcattcacatgatgagtagcaagtgctggagctgcacctctggcaatggattttacaacatgcaccaatgtggtcatcaag |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||| |||||||| | | |||||||||||| |||||||| ||||||||||||||||| |
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| T |
38379667 |
acagttccaagagaatcatgcatccacatgatgagtagcaagtgttggagctgtgcttttggcaatggattctacaacattgaccaatgtggtcatcaaa |
38379766 |
T |
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| Q |
101 |
ctcttaacaaccccatt |
117 |
Q |
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|||| |||||| ||||| |
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| T |
38379767 |
ctctcaacaactccatt |
38379783 |
T |
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