View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18374_low_29 (Length: 284)
Name: NF18374_low_29
Description: NF18374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18374_low_29 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 8e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 30 - 284
Target Start/End: Complemental strand, 30968260 - 30968024
Alignment:
| Q |
30 |
cagttttcagactctggctttttcagtaatagagaagatcctgctacttatgaggaagctgcaaagttcaattgttggaaagaggctatggatcaggaaa |
129 |
Q |
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| T |
30968260 |
cagttttcagactctggctttttcagtaatagagaagatcctgctacttatgaggaagctgcaaagttcaattgttggaaagaggctatggatcaggaaa |
30968161 |
T |
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| Q |
130 |
ttgaagccatagaaagaaatgatacatgggaactaactgatttaccaactggaagcaggaagattagtgtaaaatggatttataagac--aatacaatga |
227 |
Q |
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| T |
30968160 |
ttgaagccatagaaagaaatga--------------------taccaactggaagcaggaagattagtgtaaaatggatttataagacaaaatacaatga |
30968081 |
T |
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| Q |
228 |
aaatggtaaagttgaaaaacacaaagccagattagtagcaaaggggtactctcaaaa |
284 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30968080 |
aaatggtaaagttgaaaaacacaaagccagattagtagcaaaggggtactctcaaaa |
30968024 |
T |
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