View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18374_low_3 (Length: 592)
Name: NF18374_low_3
Description: NF18374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18374_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 220 - 577
Target Start/End: Complemental strand, 27561830 - 27561473
Alignment:
| Q |
220 |
gtggaagaggccaaagaggatactggtctgtatatcaccttttctctatttagatttgcagtgtgtatgtttggatctcctcatttcttacaatattaaa |
319 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
27561830 |
gtggaagaggccaaagaggatactggtctgtatatcaccttttctctatttagatttgcagtgtgtacgtttggatctcctcatttcttacaatattaaa |
27561731 |
T |
|
| Q |
320 |
cgtttcagggagaaatgatatcaaagctgagtttcgtgtgatatcttcagctttatctaaagaaatggggatgatggaaacacagttgaagcgatggaaa |
419 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
27561730 |
cgttttagggagaaatgatatcaaagctgagtttcgtgtgatatcttcagctttatctaaagaaatggggatgatggaaacacagttgaagcgatcgaaa |
27561631 |
T |
|
| Q |
420 |
gatgcagctcttaaagctgtagcattgcgtgagaaagcacattcattcagcgaaattgaatgggaaggttattcacacaaactgccctttcattttcttt |
519 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
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| T |
27561630 |
gatgcagctcttaaagctgtagcattgcgtgagaaagcacattcattcagcgaaattgagtgggaaggttattcacacaaacttccctttcattttcttt |
27561531 |
T |
|
| Q |
520 |
ctcacctactttgtgattggtcttgtacagaaatttatctaaataatttgagtctgtg |
577 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27561530 |
ctcacctactttgtgattggtcttgtacagaaatttatctaaataatttgagtctgtg |
27561473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 61 - 573
Target Start/End: Complemental strand, 36668870 - 36668348
Alignment:
| Q |
61 |
tttaggctggcaggattaactacgcaaagcgggagaaggaattcaatttgaaattagagtgtgctgttaatgcaaagcatatccatgacaattctgactc |
160 |
Q |
| |
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|||||||| |||||| |||| ||||| |||||||||||||| |||| ||||| |||| ||| |||||||||| |||||||||||||| ||||||||| |
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| T |
36668870 |
tttaggctagcaggactaacattgcaaaacgggagaaggaattgaattctaaattggagtctgcggttaatgcaaggcatatccatgacatttctgactc |
36668771 |
T |
|
| Q |
161 |
tatgactgatgagctcaagattcagttgcaaaagtgtattaa--------atgatgttgaaatcaaggtggaagaggccaaagaggatactggtctgtat |
252 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| | |||| |||||||| | |
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| T |
36668770 |
taggactgatgagctcaagattcagttgcaaaagtgtattaatgaaaggaatgatcttgaaatcaagatggaagaggccaaacaagatattggtctgtgt |
36668671 |
T |
|
| Q |
253 |
atcaccttttctctatttagatttgcagtgtgtatgtttggatctcctcatttcttacaatattaaacgtttcagggagaaatgatatcaaagctgagtt |
352 |
Q |
| |
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|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
36668670 |
atcatattttcattatttagatttgcagtgtgtatgtttggatctcctcatttcttacaatattaaatgtttcagggagaaaagatatcaaagctgagtt |
36668571 |
T |
|
| Q |
353 |
tcgtgtgatatcttcagctttatctaaagaaatggggatgatggaaacacagttgaagcgatggaaagatgcagctcttaaagctgtagcattgcgtgag |
452 |
Q |
| |
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| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||| | |
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| T |
36668570 |
tggtgtgatgtcttcagccttatctaaagaaatggggatgatggaaacacagttgaagcgatggaaagatgcagctcatgaagctgtatcattgcgtgcg |
36668471 |
T |
|
| Q |
453 |
aaagcacattcatt--cagcgaaattgaatgggaaggttattcacacaaactgccctttcattttctttctcacctactttgtgattggtcttgtacaga |
550 |
Q |
| |
|
||||||||||| | || |||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||| |||||| |
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| T |
36668470 |
aaagcacattcgctaagagagaaattgagtgggaaggttattcacacaaactgccatttcattttctttctcaccttctttgtgataggtcttttacaga |
36668371 |
T |
|
| Q |
551 |
aatttatctaaataatttgagtc |
573 |
Q |
| |
|
|| ||||||| |||||||||||| |
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|
| T |
36668370 |
aagttatctagataatttgagtc |
36668348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 252 - 334
Target Start/End: Complemental strand, 31707919 - 31707837
Alignment:
| Q |
252 |
tatcaccttttctctatttagatttgcagtgtgtatgtttggatctcctcatttcttacaatattaaacgtttcagggagaaa |
334 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
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| T |
31707919 |
tatcacattttctctatttagatttgtagtgtgtatgtttggatctcctcatttcttacaatattaaatgtttcaaggagaaa |
31707837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 202 - 458
Target Start/End: Original strand, 36672630 - 36672887
Alignment:
| Q |
202 |
aatgatgttgaaatcaaggtggaagaggccaaagaggatactggtctgtatatcaccttttctctatttagatttgcagtgtgtatgtttggatctcctc |
301 |
Q |
| |
|
|||||| | ||||| ||| ||||| |||||||| | |||| ||||||| ||||||| |||| ||||||||||| || ||||| |||||||| ||||||| |
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|
| T |
36672630 |
aatgatatggaaattaagatggaaaaggccaaacaagatattggtctgcatatcacattttatctatttagatatgaagtgtctatgtttgaatctccta |
36672729 |
T |
|
| Q |
302 |
atttcttacaatattaaacgtttcagggagaaatgatatcaaagctgagtttcgtgtgat-atcttcagctttatct-aaagaaatggggatgatggaaa |
399 |
Q |
| |
|
||||||||| |||| | |||| | |||||| | |||||||| |||||| |||||||| ||| | |||||||||| ||| |||| ||||||| ||| |
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| T |
36672730 |
gtttcttacagtattgcatgtttaaaggagaataggtatcaaagttgagttacgtgtgatgatcat-agctttatctaaaaaaaattgggatgacagaag |
36672828 |
T |
|
| Q |
400 |
cacagttgaagcgatggaaagatgcagctcttaaagctgtagcattgcgtgagaaagca |
458 |
Q |
| |
|
||||||||| |||||||||||| ||||||| ||| |||| ||||| ||||||||||| |
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| T |
36672829 |
atcagttgaagtgatggaaagatgtagctcttgaagttgtatcattgtgtgagaaagca |
36672887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 228 - 440
Target Start/End: Original strand, 27563307 - 27563519
Alignment:
| Q |
228 |
ggccaaagaggatactggtctgtatatcaccttttctctatttagatttgcagtgtgtatgtttggatctcctcatttcttacaatattaaacgtttcag |
327 |
Q |
| |
|
||||||| | ||| || ||||| ||||||| |||| | ||||||||| | |||||||||||||| |||| || |||||||| ||||| | ||||||| |
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|
| T |
27563307 |
ggccaaacaagatgctagtctgcatatcacattttttgtatttagatgtctagtgtgtatgtttgaatcttctagtttcttaccatattgcatgtttcag |
27563406 |
T |
|
| Q |
328 |
ggagaaatgatatcaaagctgagtttcgtgtgat-atcttcagctttatctaaagaaat-ggggatgatggaaacacagttgaagcgatggaaagatgca |
425 |
Q |
| |
|
||||| | |||||| || |||||| ||||||| ||||| ||||||||||||| |||| ||||||||||||| ||||||||| ||| ||| |||||| |
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|
| T |
27563407 |
ggagagaagatatc-aacttgagttatgtgtgatgatctt-agctttatctaaaaaaatcggggatgatggaagagcagttgaagtgatagaaggatgca |
27563504 |
T |
|
| Q |
426 |
gctcttaaagctgta |
440 |
Q |
| |
|
|||||| ||| |||| |
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|
| T |
27563505 |
gctcttgaagttgta |
27563519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 61 - 201
Target Start/End: Original strand, 27563153 - 27563291
Alignment:
| Q |
61 |
tttaggctggcaggattaactacgcaaagcgggagaaggaattcaatttgaaattagagtgtgctgttaatgcaaagcatatccatgacaattctgactc |
160 |
Q |
| |
|
|||||||||||||| |||| | |||| ||||||||||| | ||||||||||| |||| ||||| |||||||| || ||||| |||||||||||| | |
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|
| T |
27563153 |
tttaggctggcagggctaacatctcaaaatgggagaaggaactgaatttgaaattggagtctgctgataatgcaaggcgtatccttgacaattctga--c |
27563250 |
T |
|
| Q |
161 |
tatgactgatgagctcaagattcagttgcaaaagtgtatta |
201 |
Q |
| |
|
|||||| |||| ||| || |||||||||| || ||||||| |
|
|
| T |
27563251 |
tatgaccgatggcctcgagcttcagttgcagaaatgtatta |
27563291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 53 - 577
Target Start/End: Complemental strand, 29411410 - 29410876
Alignment:
| Q |
53 |
aatgcaactttaggctggcaggattaactacgcaaagcgggagaaggaattcaatttgaaattagagtgtgctgttaatgcaaagcatatccatgacaat |
152 |
Q |
| |
|
||||||| |||||||||||||| ||||| | |||| ||||||||||| || || |||||||| |||| |||||||||||||| |||||||||||||||| |
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|
| T |
29411410 |
aatgcaattttaggctggcagggttaacgtctcaaaacgggagaaggagttgaagttgaaattggagtctgctgttaatgcaaggcatatccatgacaat |
29411311 |
T |
|
| Q |
153 |
tctgactctatgactgatgagctcaagattcagttgcaaaagtgtatta--------aatgatgttgaaatcaaggtggaagaggccaaagaggatactg |
244 |
Q |
| |
|
|||||||||| || ||||||||||||| |||| ||||| |||||||||| |||||| ||||||| | | |||||||||||||| ||||||||| |
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|
| T |
29411310 |
tctgactctaggattgatgagctcaagcttcaattgcagaagtgtattattgaaaagaatgatcttgaaattacgatggaagaggccaaacaggatactg |
29411211 |
T |
|
| Q |
245 |
gtctgtatatcaccttttctctatttagatttgcagtgtgtatgtttggatctcctcatttcttacaatattaaacgtttcagggagaaatgatatcaaa |
344 |
Q |
| |
|
||||| || ||| ||||||||||||| ||||||| |||||||||||||||| |||| ||||||||| | ||||| ||||||||||||| || |||||| |
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|
| T |
29411210 |
gtctgcgtagcacattttctctatttatatttgcactgtgtatgtttggatcccctcgtttcttacactgttaaatttttcagggagaaaagacatcaaa |
29411111 |
T |
|
| Q |
345 |
gctgagtttcgtgtgatatcttcagctttatctaaagaaatggggatgatggaaacacagttgaagcgatggaaagatgcagctcttaaagctgtagcat |
444 |
Q |
| |
|
|| |||||||||||||| |||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||||||| ||| |
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|
| T |
29411110 |
gccgagtttcgtgtgatggcttcagctttatctaaagaaatggggatgatggacgcgcaggtgaagcgatggaaagatgcagctcttgaagctgtatcat |
29411011 |
T |
|
| Q |
445 |
tgcgtgagaaagcacattcattcagcg--aaattgaatgggaaggttattcacacaaactgccctttcattttctttctcacctactttgtgattggtct |
542 |
Q |
| |
|
| ||||||||||| |||||| | || | ||||||| ||| |||||||||| || ||| | ||||||||||||||||||| ||||||||||||| |||| |
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|
| T |
29411010 |
tacgtgagaaagcgcattcactaagagaaaaattgagtggaaaggttattcgcataaagtaccctttcattttctttctcgcctactttgtgataagtct |
29410911 |
T |
|
| Q |
543 |
tgtacagaaatttatctaaataatttgagtctgtg |
577 |
Q |
| |
|
| |||||||||| |||| ||||||||||| |||| |
|
|
| T |
29410910 |
tttacagaaattcatcttgataatttgagtttgtg |
29410876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 172; Significance: 4e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 260 - 576
Target Start/End: Original strand, 24202401 - 24202719
Alignment:
| Q |
260 |
tttctctatttagatttgcagtgtgtatgtttggatctcctcatttcttacaatattaaacgtttcagggagaaatgatatcaaagctgagtttcgtgtg |
359 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||| |||||||||| ||| |||||||||| |||||||||||| |
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|
| T |
24202401 |
tttctctatttagatttgcagtgagtatgtttagatctccttggttcttacaatattaaatgtttcagggacaaaagatatcaaagttgagtttcgtgtt |
24202500 |
T |
|
| Q |
360 |
atatcttcagctttatctaaagaaatggggatgatggaaacacagttgaagcgatggaaagatgcagctcttaaagctgtagcattgcgtgagaaagcac |
459 |
Q |
| |
|
|| ||||| ||||||||||||||||||| |||||||| |||||||||||||||| |||||||||| ||| |||| ||| | |||||||||||||||| |
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|
| T |
24202501 |
atggcttcaactttatctaaagaaatgggaatgatggatgcacagttgaagcgatgagaagatgcagcacttgaagccgtatccttgcgtgagaaagcac |
24202600 |
T |
|
| Q |
460 |
attcatt--cagcgaaattgaatgggaaggttattcacacaaactgccctttcattttctttctcacctactttgtgattggtcttgtacagaaatttat |
557 |
Q |
| |
|
||||| | ||||||||||| ||||||||||||||||||||| | |||||||||||||||| ||||| |||||||||| |||||| ||||| ||||||| |
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|
| T |
24202601 |
attcactaagagcgaaattgagtgggaaggttattcacacaaagttccctttcattttctttgtcaccgactttgtgataggtcttttacagcaatttat |
24202700 |
T |
|
| Q |
558 |
ctaaataatttgagtctgt |
576 |
Q |
| |
|
||| ||||||||||||||| |
|
|
| T |
24202701 |
ctagataatttgagtctgt |
24202719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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