View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18374_low_32 (Length: 274)
Name: NF18374_low_32
Description: NF18374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18374_low_32 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 7 - 254
Target Start/End: Original strand, 38298474 - 38298723
Alignment:
| Q |
7 |
tcgaagaatatgtttggtatatatgatgagtttttcatttcaaactgaattttcaatctcttacatcttggatcaacgatccaagtggatgcccataaaa |
106 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38298474 |
tcgaaaaatatgtttggtatatatgatgagtttttcatttcaaactgaattttcaatctcttacatcttggatcaacgatccaagtggatgcccataaaa |
38298573 |
T |
|
| Q |
107 |
catttttgtattcgagaaaggatctttgaataaaaaatctcattatagttttatgtcatattttaatgatgagtttagtatacaaattatgtgaaaattt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
38298574 |
catttttgtattcgagaaaggatctttgaataaaaaatctcattatagttttatgtcatattttaatgatgagtttagtatacaaattatgtgaaagttt |
38298673 |
T |
|
| Q |
207 |
ccccttttaagacat--tgttgtgcatatagttacggagaaaactaaagt |
254 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38298674 |
ccccttttaagacattgtgttgtgcatatagttacggagaaaactaaagt |
38298723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University