View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18374_low_33 (Length: 273)
Name: NF18374_low_33
Description: NF18374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18374_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 271
Target Start/End: Complemental strand, 50149829 - 50149576
Alignment:
| Q |
18 |
gtgttgtgtgagtggaattggtgttaactggggtacacagtgtacacatcttttgtcaccaaccacagtggtgaaaatgctgaaagataatgggattcag |
117 |
Q |
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| T |
50149829 |
gtgttgtgtgagtggaattggtgttaactggggtacacagtgtacacatcttttgtcaccaaccacagtggtgaaaatgctgaaagataatgggattcag |
50149730 |
T |
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| Q |
118 |
aaggtgaaactatttgatgctgatccaaatatcttaaatgctctcaagaagactggtattcaagtcatggtggggattccaaatgacatgctttatacac |
217 |
Q |
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| T |
50149729 |
aaggtgaaactatttgatgctgatccaaatatcttaaatgctctcaagaagactggtattcaagtcatggtggggattccaaatgacatgctttatacac |
50149630 |
T |
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| Q |
218 |
ttgctaatagtcttccagctgctgaaaaatgggtttccaagaatgtctctgctc |
271 |
Q |
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| T |
50149629 |
ttgctaatagtcttccagctgctgaaaaatgggtttccaagaatgtttctgctc |
50149576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 29 - 263
Target Start/End: Original strand, 1751687 - 1751921
Alignment:
| Q |
29 |
gtggaattggtgttaactggggtacacagtgtacacatcttttgtcaccaaccacagtggtgaaaatgctgaaagataatgggattcagaaggtgaaact |
128 |
Q |
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|||||||||| ||||||||||| ||||||| ||||||| || ||||| | ||||| ||||||||| | ||||||||||| ||||| || || || || |
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| T |
1751687 |
gtggaattggagttaactggggaacacagtcaacacatccattaccaccatctacagtagtgaaaatgttaaaagataatggtattcaaaaagttaagct |
1751786 |
T |
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| Q |
129 |
atttgatgctgatccaaatatcttaaatgctctcaagaagactggtattcaagtcatggtggggattccaaatgacatgctttatacacttgctaatagt |
228 |
Q |
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| T |
1751787 |
ttttgatgctgatccaaatattcttgatgctttaaagaaatctgggattcaagttatggttggtataccaaatgatttgctttatactatggctaatagt |
1751886 |
T |
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| Q |
229 |
cttccagctgctgaaaaatgggtttccaagaatgt |
263 |
Q |
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| T |
1751887 |
cgtcaagctgctgaaaaatgggttgctaagaatgt |
1751921 |
T |
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