View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18374_low_37 (Length: 248)
Name: NF18374_low_37
Description: NF18374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18374_low_37 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 14 - 232
Target Start/End: Complemental strand, 26131246 - 26131028
Alignment:
| Q |
14 |
ttataactgatggtgaccttgcaatgaaagattccattacaaaaatattccctgccgcccatcacagattgtgtgcttggcatctgttaaagaatgcatc |
113 |
Q |
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| T |
26131246 |
ttataactgatggtgaccttgcaatgaaagattccattacaaaaatattccctgcagcccatcacagattgtgtgcttggcatctgttaaagaatgcatc |
26131147 |
T |
|
| Q |
114 |
aaccaagattgggattcccgattttatgccttatcttaaaaaatgcatgctggctgacattgaggttaataaatttgaagggttgtggtctgagatggtt |
213 |
Q |
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| T |
26131146 |
aaccaagattgggattcccgattttatgccttatcttaaaaaatgcatgctggctgacattgaggttaataaatttgaagagttgtggtctgagatggtt |
26131047 |
T |
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| Q |
214 |
caaaagtttgcgttacaag |
232 |
Q |
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| T |
26131046 |
caaaagtttgggttacaag |
26131028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 35242021 - 35241794
Alignment:
| Q |
1 |
cctcctttatccgttataactgatggtgaccttgcaatgaaagattccattacaaaaatattccctgccgcccatcacagattgtgtgcttggcatctgt |
100 |
Q |
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| T |
35242021 |
cctcctttgtcagttataacagatggagaccttgcaatgaaaaatgccattaaaaaggtttttcctgcagcgcaccacaggttgtgtgcttggcatctgt |
35241922 |
T |
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| Q |
101 |
taaagaatgcatcaaccaagattgggattcccgattttatgccttatcttaaaaaatgcatgctggctgacattgaggttaataaatttgaagggttgtg |
200 |
Q |
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| T |
35241921 |
taaggaatgcttgcaccaacattgggattcctgattttatgtcttatctgaaaaaatgcatgctgactgacattgagattaacaaatttgaagatctgtg |
35241822 |
T |
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| Q |
201 |
gtctgagatggttcaaaagtttgcgtta |
228 |
Q |
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| T |
35241821 |
gtctgagatggttcaaaagtttgggtta |
35241794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 11010335 - 11010562
Alignment:
| Q |
1 |
cctcctttatccgttataactgatggtgaccttgcaatgaaagattccattacaaaaatattccctgccgcccatcacagattgtgtgcttggcatctgt |
100 |
Q |
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| T |
11010335 |
cctcctttgtcagttataacagatggcgaccttgcaatgaaaaatgccattaaaaaggtttttcctacagcgcaccacaggttgtgtgcctggcatctgt |
11010434 |
T |
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| Q |
101 |
taaagaatgcatcaaccaagattgggattcccgattttatgccttatcttaaaaaatgcatgctggctgacattgaggttaataaatttgaagggttgtg |
200 |
Q |
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| T |
11010435 |
taaggaatgcttccaccaacattgggattcctgattttatgtcttatctgaaaaaatgcatgttgggtgacattgagattaacaaatttgaaaatctgtt |
11010534 |
T |
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| Q |
201 |
gtctgagatggttcaaaagtttgcgtta |
228 |
Q |
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| T |
11010535 |
gtctgagatggttcaaaagtttgggtta |
11010562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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