View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18374_low_38 (Length: 246)
Name: NF18374_low_38
Description: NF18374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18374_low_38 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 16 - 230
Target Start/End: Original strand, 23882564 - 23882778
Alignment:
| Q |
16 |
ctattggcatgcaatatgttaaagttgaagagcttgtcaatgagcacgaggagtggagaatgaataatttgcaagggtagctccctgttgaaattctgga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| || |||||||||||||||||||| |
|
|
| T |
23882564 |
ctattggcatgcaatatgttaaagttgaagagcttgtcaatgagcatgaggagtggagaatgaatcatttgcaaggataactccctgttgaaattctgga |
23882663 |
T |
|
| Q |
116 |
cagatatagagccatcccgccgccaaatattgattatggtaacgatgtttgtacttagggcctggtgtgcgtgttggtgatttctcagttgctcaaactt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
23882664 |
cagatatagagccatcccgccgccaaatattgattatggtaactatgtttgtgcgtagggcctggtgtgagtgttggtgatttctcacttgctcaaactt |
23882763 |
T |
|
| Q |
216 |
atgtagagttatgtg |
230 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
23882764 |
ataaagagttatgtg |
23882778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 18 - 230
Target Start/End: Complemental strand, 23420745 - 23420533
Alignment:
| Q |
18 |
attggcatgcaatatgttaaagttgaagagcttgtcaatgagcacgaggagtggagaatgaataatttgcaagggtagctccctgttgaaattctggaca |
117 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23420745 |
attggcatgtaatatgttaaagttgaagagcttgtcagtgagcacggggagtggagaatgaataatttgcaagggtagctccctgttgaaattctggaca |
23420646 |
T |
|
| Q |
118 |
gatatagagccatcccgccgccaaatattgattatggtaacgatgtttgtacttagggcctggtgtgcgtgttggtgatttctcagttgctcaaacttat |
217 |
Q |
| |
|
||| |||||||||||| || ||||||||||||||||||| |||||||||| | ||||||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
23420645 |
gatttagagccatcccaccaccaaatattgattatggtagcgatgtttgtgcgtagggcctggtacgcgtgttggtgatttctcagttgctcaagcttat |
23420546 |
T |
|
| Q |
218 |
gtagagttatgtg |
230 |
Q |
| |
|
||||||||||| |
|
|
| T |
23420545 |
aaagagttatgtg |
23420533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University