View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18374_low_4 (Length: 526)
Name: NF18374_low_4
Description: NF18374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18374_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 470; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 12 - 509
Target Start/End: Complemental strand, 41891826 - 41891329
Alignment:
| Q |
12 |
agcataggcaaataaacagttggtgaactcagtttttgaacttatgttgtaattgaatcaattgaaagtaagatttagtagaggataatacacaactcct |
111 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41891826 |
agcagaggcaaataaacagttggtgaactcagtttttgaacttatgttgcaattgaatcaattgaaagtaagatttagtagaggataatacacaactcct |
41891727 |
T |
|
| Q |
112 |
agtagatgcaaattaaagaatgcttcgatatgtcagttgatcaagctgttgaccgttgatattaaattatagctacaaaaataggtgcaattgtatcggt |
211 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41891726 |
agtagatgcaaattaaagaatgcttcgacatgtcagttgatcaagctgttgactgttgatattaaattatagctacaaaaataggtgcaattgtatcggt |
41891627 |
T |
|
| Q |
212 |
actaatgcgccgaacccaatcagaactctacagttaagcgtgtgtaagctagagtattacaagacctcataaaaaattcatattcaactaaagccttgat |
311 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41891626 |
actaatgtgccgaacccaatcagaactctacagttaagcgtgtgtaagctagagtattacaagacctcataaaaaattcatattcaactaaagccttgat |
41891527 |
T |
|
| Q |
312 |
attgtggtgttttgactgcagttattcaactatagcatgggtggcttgcttacctagaggccggattgacaatgttagctatgcatacaaaccaatcagc |
411 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41891526 |
attgtggtgttttgagtgcagttattcaactatagcatgggtggcttgcttacctagaggccggattgacaatgttagctatgcatacaaaccaatcagc |
41891427 |
T |
|
| Q |
412 |
aaaattgatttattgttcagagtcttcaatgcacttggtcaaatatcatttgcatttgctggccatgcagtgacccttgaaattcaagctacgattcc |
509 |
Q |
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| T |
41891426 |
aaaactgatttattgttcagagtcttcaatgcacttggtcaaatatcatttgcatttgctggccatgcagtgacccttgaaattcaagctacgattcc |
41891329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 321 - 509
Target Start/End: Complemental strand, 41897093 - 41896905
Alignment:
| Q |
321 |
ttttgactgcagttattcaactatagcatgggtggcttgcttacctagaggccggattgacaatgttagctatgcatacaaaccaatcagcaaaattgat |
420 |
Q |
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|||||||||||| ||||||||||||||||||||||| |||||| ||||||| |||||||||||||||| |||||||||||| | ||||||||||| |||| |
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| T |
41897093 |
ttttgactgcagctattcaactatagcatgggtggcatgcttatctagaggtcggattgacaatgttaactatgcatacaagcaaatcagcaaaactgat |
41896994 |
T |
|
| Q |
421 |
ttattgttcagagtcttcaatgcacttggtcaaatatcatttgcatttgctggccatgcagtgacccttgaaattcaagctacgattcc |
509 |
Q |
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|||||||| |||||||||| ||||||||||||||| |||||||||||| ||||||| |||||||| || |||||||| ||||| ||||| |
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| T |
41896993 |
ttattgtttagagtcttcagtgcacttggtcaaatctcatttgcattttctggccaagcagtgacactagaaattcaggctacaattcc |
41896905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 334 - 509
Target Start/End: Original strand, 22550430 - 22550605
Alignment:
| Q |
334 |
tattcaactatagcatgggtggcttgcttacctagaggccggattgacaatgttagctatgcatacaaaccaatcagcaaaattgatttattgttcagag |
433 |
Q |
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|||||||||||||| ||||| ||||||||| | | ||| || |||| ||||| |||||| |||||||| || |||| || ||| ||| | ||| || |
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| T |
22550430 |
tattcaactatagcctgggtagcttgcttagccaaaggtagggttgagaatgtgagctattcatacaaaggaacaagcacaagtgacttaatattccgaa |
22550529 |
T |
|
| Q |
434 |
tcttcaatgcacttggtcaaatatcatttgcatttgctggccatgcagtgacccttgaaattcaagctacgattcc |
509 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||| || ||||| |
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| T |
22550530 |
tcttcaatgcacttggtcaaatttcatttgcatttgctggccatgcagtagcacttgaaattcaagcaacaattcc |
22550605 |
T |
|
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