View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18374_low_41 (Length: 226)
Name: NF18374_low_41
Description: NF18374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18374_low_41 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 120; Significance: 1e-61; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 36 - 226
Target Start/End: Original strand, 43724235 - 43724426
Alignment:
| Q |
36 |
atagagtacctaaaaccgtacccattcatgggtcacatgaattattctgtagtgttgctataatttattactcnnnnnnnnnnnnnnnn-aacaaggagt |
134 |
Q |
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| T |
43724235 |
atagggtacctaaaaccatacccatccatgggtcacatgaattattctgtagtgttgctataatttattactctctttttgtttttttttaacaaggagt |
43724334 |
T |
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| Q |
135 |
tcttaaattatatagaaaataaatcaattcaacatataataacattttttaaacccatagcaaataattcattggtaaacaatttgaataac |
226 |
Q |
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| T |
43724335 |
tcttaaattatatagaaaataaatcaattcaacatattataacattttttaaacccatagcaaataattcattggtaaacaatttgaataac |
43724426 |
T |
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