View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18374_low_45 (Length: 216)
Name: NF18374_low_45
Description: NF18374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18374_low_45 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 19 - 208
Target Start/End: Complemental strand, 47285621 - 47285432
Alignment:
| Q |
19 |
actacaagactgaaagtgaagaagagagaaaaaagagatacatgtctaggatccgaaagagaccagatctccagattcaaaagctcgatgatggaacaac |
118 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
47285621 |
actacaagactgaaagtgaagaagagagaaaaaagagatacatgtctaggatccgaaagagaccatatctccagattcaaaagctcgatgatggaacaac |
47285522 |
T |
|
| Q |
119 |
tactcttgttcctgtcattgcttctattgatcagtcacatgctccttctttcagttatgatactcaaaatatgagcgcctatgctactcc |
208 |
Q |
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|||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||| |||| |
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| T |
47285521 |
tactcttgtttctgtcattgcttttattgatcagtcgcatgctccttctttcagttatgatactcaaaatataagcgcctgtgctcctcc |
47285432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 193
Target Start/End: Complemental strand, 47307178 - 47307007
Alignment:
| Q |
19 |
actacaagactgaaagtgaagaagagagaaaaaagagatacatgtctaggatccgaaagagaccagatctccagattc-aaaagctcgatgatggaacaa |
117 |
Q |
| |
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|||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||| |
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| T |
47307178 |
actacaagtcagaaagtgaagaagagaaaaaaaagagatacatgtctaggatccgaaagagaccagatctcc-gattccaaaagctcaatgatggaacaa |
47307080 |
T |
|
| Q |
118 |
ctactcttgttcctgtcattgcttctattgatcagtcacatgctccttctttcagttatgatactcaaaatatgag |
193 |
Q |
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||||| ||||||| |||||||||| |||| |||||||||||| |||| | |||||| ||| ||| |||||||| |
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| T |
47307079 |
ctacttttgttcc---cattgcttctgttgaccagtcacatgctgtttctgtaagttataataatcataatatgag |
47307007 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 3e-44; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 19 - 193
Target Start/End: Complemental strand, 2589668 - 2589494
Alignment:
| Q |
19 |
actacaagactgaaagtgaagaagagagaaaaaagagatacatgtctaggatccgaaagagaccagatctccagattcaaaagctcgatgatggaacaac |
118 |
Q |
| |
|
|||||||| |||||| | ||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||| ||||||||||||| |
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| T |
2589668 |
actacaagtctgaaactctagaagagagaaaaaagagatacatgtctaagatccgaaagagaccaaatctccggattcaaaagctcaatgatggaacaac |
2589569 |
T |
|
| Q |
119 |
tactcttgttcctgtcattgcttctattgatcagtcacatgctccttctttcagttatgatactcaaaatatgag |
193 |
Q |
| |
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|||| ||||||| || |||||||| ||||||| || |||||| ||| ||| |||||||| |||||||||||| |
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| T |
2589568 |
tacttttgttccagttgttgcttctgttgatcaatctcatgctactttggtcaattatgataatcaaaatatgag |
2589494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 193
Target Start/End: Complemental strand, 10299729 - 10299555
Alignment:
| Q |
19 |
actacaagactgaaagtgaagaagagagaaaaaa-gagatacatgtctaggatccgaaagagaccagatctccagattcaaaagctcgatgatggaacaa |
117 |
Q |
| |
|
|||||||| |||||| | ||||||||||||||| |||||||||||||| |||| |||||||||| |||||||||||||||||||| ||||| |||||| |
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| T |
10299729 |
actacaagtctgaaactctagaagagagaaaaaaagagatacatgtctatgatctaaaagagaccaaatctccagattcaaaagctcaatgatagaacaa |
10299630 |
T |
|
| Q |
118 |
ctactcttgttcctgtcattgcttctattgatcagtcacatgctccttctttcagttatgatactcaaaatatgag |
193 |
Q |
| |
|
||||| ||||||| || || ||||| ||||||| || |||||| ||| ||| |||||||| |||||||||||| |
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|
| T |
10299629 |
ctacttttgttccggttgtt-cttctgttgatcattctcatgctactttgatcaattatgataatcaaaatatgag |
10299555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 48 - 193
Target Start/End: Original strand, 2589833 - 2589978
Alignment:
| Q |
48 |
aaaaagagatacatgtctaggatccgaaagagaccagatctccagattcaaaagctcgatgatggaacaactactcttgttcctgtcattgcttctattg |
147 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |||| || |||||||| ||| ||| ||||||||| ||| |||||| || ||| |||| ||| |
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| T |
2589833 |
aaaaagagatacatgtctaggatcccaaagagaccaaatcttcatattcaaaaactcaatgttggaacaacaacttttgttcgagttgttgtttctgttg |
2589932 |
T |
|
| Q |
148 |
atcagtcacatgctccttctttcagttatgatactcaaaatatgag |
193 |
Q |
| |
|
||||||| |||||| ||||| ||| |||||||| |||||||||||| |
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|
| T |
2589933 |
atcagtcgcatgctgcttctgtcaattatgataatcaaaatatgag |
2589978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 45 - 193
Target Start/End: Original strand, 10299891 - 10300039
Alignment:
| Q |
45 |
agaaaaaagagatacatgtctaggatccgaaagagaccagatctccagattcaaaagctcgatgatggaacaactactcttgttcctgtcattgcttcta |
144 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| | |||| ||||||| ||| ||| ||| ||||||||| ||| |||||| || ||| ||||| |
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| T |
10299891 |
agaaaaaagagatacatgtctaggatcccaaagagataaaatcttcagattccaaaactcaatgttggaacaacaacttttgttcaagttgttgtttcta |
10299990 |
T |
|
| Q |
145 |
ttgatcagtcacatgctccttctttcagttatgatactcaaaatatgag |
193 |
Q |
| |
|
|||||||||| |||||| ||||| ||| |||||||| |||||||||||| |
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|
| T |
10299991 |
ttgatcagtcgcatgctgcttctgtcaattatgataatcaaaatatgag |
10300039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 6e-33; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 30 - 161
Target Start/End: Original strand, 38261080 - 38261211
Alignment:
| Q |
30 |
gaaagtgaagaagagagaaaaaagagatacatgtctaggatccgaaagagaccagatctccagattcaaaagctcgatgatggaacaactactcttgttc |
129 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||| |||||||| || ||| ||||||||||||||| ||||||||||||||||| |||||| |
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| T |
38261080 |
gaaagtgaagaagacagaaaaaagagatacatttctaggattcgaaagaggccgcgtcttcagattcaaaagctcaatgatggaacaactacttttgttc |
38261179 |
T |
|
| Q |
130 |
ctgtcattgcttctattgatcagtcacatgct |
161 |
Q |
| |
|
|||| ||||||| | |||| ||||||||||| |
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|
| T |
38261180 |
ctgttattgcttgtggtgataagtcacatgct |
38261211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 30 - 161
Target Start/End: Original strand, 38244780 - 38244911
Alignment:
| Q |
30 |
gaaagtgaagaagagagaaaaaagagatacatgtctaggatccgaaagagaccagatctccagattcaaaagctcgatgatggaacaactactcttgttc |
129 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||||| ||||||||||| ||| ||||||||||||||| ||||||||| ||||||| |||||| |
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|
| T |
38244780 |
gaaagtgaagaagacagaaaaaagagatacaattctaggattcgaaagagaccgcgtcttcagattcaaaagctcaatgatggaagaactacttttgttc |
38244879 |
T |
|
| Q |
130 |
ctgtcattgcttctattgatcagtcacatgct |
161 |
Q |
| |
|
|||| |||||| | |||| ||||||||||| |
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|
| T |
38244880 |
ctgttgttgcttgtgctgataagtcacatgct |
38244911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 38 - 192
Target Start/End: Complemental strand, 22222382 - 22222226
Alignment:
| Q |
38 |
agaagagagaaaaaagagatacatgtctaggatccgaaagag--accagatctccagattcaaaagctcgatgatggaacaactactcttgttcctgtca |
135 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| |||| |||||| |||||| ||| || ||||||||||||||||| |||||| || |
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|
| T |
22222382 |
agaagagaaaaaaaagagatacatgtctaggatccgaaagagtgaccaaatctccggattcataagatcaatgatggaacaactacttttgttcgagttg |
22222283 |
T |
|
| Q |
136 |
ttgcttctattgatcagtcacatgctccttctttcagttatgatactcaaaatatga |
192 |
Q |
| |
|
||||||||||||| || || |||||| ||| | ||| |||||||| ||||||||||| |
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|
| T |
22222282 |
ttgcttctattgaccaatctcatgctgcttttgtcaattatgataatcaaaatatga |
22222226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 37 - 193
Target Start/End: Original strand, 22222556 - 22222712
Alignment:
| Q |
37 |
aagaagagagaaaaaagagatacatgtctaggatccgaaagagaccagatctccagattcaaaagctcgatgatggaacaactactcttgttcctgtcat |
136 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| ||||||| || |||| ||||||||||| ||| ||| ||||||||| || ||||| | || | |
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|
| T |
22222556 |
aagaagaaagaaaaaagagatacatgtctaggatcccaaagagaacaaatctgcagattcaaaaactcaatgttggaacaacaacatttgtttcagttgt |
22222655 |
T |
|
| Q |
137 |
tgcttctattgatcagtcacatgctccttctttcagttatgatactcaaaatatgag |
193 |
Q |
| |
|
|| ||| ||||||||| |||||| ||||| ||| |||||||| |||||||||||| |
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|
| T |
22222656 |
tgtttccgttgatcagttgcatgctgcttctatcaattatgataatcaaaatatgag |
22222712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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