View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18374_low_5 (Length: 488)
Name: NF18374_low_5
Description: NF18374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18374_low_5 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 5 - 221
Target Start/End: Original strand, 25028146 - 25028362
Alignment:
| Q |
5 |
gagagagaagaaactaacccaagaacatgacgaccaccatcatgaactgcttgagaaacaagacccatcagacccacactaccacctccataaaccaaat |
104 |
Q |
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| T |
25028146 |
gagagagaagaaactaacccaagaacatgacgtccaccatcatgaactgcttgagaaacaagacccatcagacccacactaccacctccataaaccaaat |
25028245 |
T |
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| Q |
105 |
caatccttctctcaaccttcaacattgaaaatacaaaccaaaatgacacgtgtaactatagtaatcatgacaacaaaaccaaaccaagctagaaagaaag |
204 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25028246 |
caatccttctctcaaccttcaacattgaaaacacaaaccaaaatgacacgtgtaactatagtaatcatgacaacaaaaccaaaccaagctagaaagaaag |
25028345 |
T |
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| Q |
205 |
aaacaataatattgatt |
221 |
Q |
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| T |
25028346 |
aaacaataatattgatt |
25028362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 365 - 472
Target Start/End: Original strand, 25028502 - 25028609
Alignment:
| Q |
365 |
gtagcccttggctatagggnnnnnnntcatgaaagattgtgggaaatggtaaaggctaatagcacgctccgtatagtgtaatgatacaaagctttgcacg |
464 |
Q |
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| T |
25028502 |
gtagcccttggctatagggaaaaaaatcatgaaagattgtgggaaatggtaaaggctaatagcacgctccgtatagtgtaatgatacaaagctttgcacg |
25028601 |
T |
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| Q |
465 |
ttcatttt |
472 |
Q |
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| T |
25028602 |
ttcatttt |
25028609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 78
Target Start/End: Complemental strand, 77310 - 77261
Alignment:
| Q |
29 |
acatgacgaccaccatcatgaactgcttgagaaacaagacccatcagacc |
78 |
Q |
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| T |
77310 |
acatggcgaccaccatcatgaacagcttgagaaactaaacccatgagacc |
77261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 78
Target Start/End: Original strand, 40888974 - 40889023
Alignment:
| Q |
29 |
acatgacgaccaccatcatgaactgcttgagaaacaagacccatcagacc |
78 |
Q |
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| T |
40888974 |
acatggcgaccaccatcatgaacagcttgagaaactaaacccatgagacc |
40889023 |
T |
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