View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18374_low_6 (Length: 484)
Name: NF18374_low_6
Description: NF18374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18374_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 320; Significance: 1e-180; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 16 - 363
Target Start/End: Complemental strand, 9213685 - 9213338
Alignment:
| Q |
16 |
aattgaaacattgatttgtattccgacaactaacggtgtaatcgaaatgggttctaatgacaatatccaacaaaattggaacctcatacaccaagccaaa |
115 |
Q |
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| T |
9213685 |
aattgaaacattgatttgtattccgacaactaacggtgtaatcgaaatgggttcttacgataatatccaacaaaattggaacctagtacaccaagctaaa |
9213586 |
T |
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| Q |
116 |
tctatgttccaaacatcctcgtcagaatctaactcagaaatagatcttatctccacaaacccacttgacaaatctatgttccaaacattcgccgacatcg |
215 |
Q |
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| T |
9213585 |
tctatgttccaaacatcctcgtcagaatctaactcagaaatagatcttatctccacaaatccacttgacaaatctatgttccaaacattcgccgacatcg |
9213486 |
T |
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| Q |
216 |
gtatcgtctccggttccggagaagacaccgatgagacacaaaaaacaatgaaccaaaaattgcaacaaatgaataacattgtttcatcatgttctattga |
315 |
Q |
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| T |
9213485 |
gtatcgtctccggttccggagaagacaccgatgagacacaaaaaacaatgaaccaaaaattgcaacaaatgaataacattgtttcatcatgttctattga |
9213386 |
T |
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| Q |
316 |
ttctgaaaattctgattcagaatattgtccaccattagcaacaccaac |
363 |
Q |
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| T |
9213385 |
ttctgaaaattctgattcagaatattgtccaccattagcaacaccaac |
9213338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 20 - 188
Target Start/End: Original strand, 9194346 - 9194514
Alignment:
| Q |
20 |
gaaacattgatttgtattccgacaactaacggtgtaatcgaaatgggttctaatgacaatatccaacaaaattggaacctcatacaccaagccaaatcta |
119 |
Q |
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| T |
9194346 |
gaaacactgatttgtattccgacaactaacggtgtaatcgaaatgggttcttatgacaatatccaacaaaattggaacctcgtgcaccaagctaaatcta |
9194445 |
T |
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| Q |
120 |
tgttccaaacatcctcgtcagaatctaactcagaaatagatcttatctccacaaacccacttgacaaat |
188 |
Q |
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| T |
9194446 |
tgttccaaacatcctcgtcagaatcaaactcaaatttagatcttacctccaccaccccatttgacaaat |
9194514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 295 - 358
Target Start/End: Original strand, 9194627 - 9194690
Alignment:
| Q |
295 |
tgtttcatcatgttctattgattctgaaaattctgattcagaatattgtccaccattagcaaca |
358 |
Q |
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| T |
9194627 |
tgtttcatcatgttctttagattctgaagattctgattcagaatattgtccactgttagcaaca |
9194690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 483
Target Start/End: Original strand, 9194755 - 9194812
Alignment:
| Q |
426 |
cattagcaggaattcaaacaccgacgaactatgtggaagcagagagacaaaggagaga |
483 |
Q |
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| T |
9194755 |
cattaacaggaactcaaacaccgatgaaccatgtggaagcagagagacaaaggagaga |
9194812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 426 - 483
Target Start/End: Complemental strand, 9213275 - 9213218
Alignment:
| Q |
426 |
cattagcaggaattcaaacaccgacgaactatgtggaagcagagagacaaaggagaga |
483 |
Q |
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||||| |||||| ||||||||| | |||| |||||||||||||||||||||||||||| |
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| T |
9213275 |
cattatcaggaactcaaacaccaatgaaccatgtggaagcagagagacaaaggagaga |
9213218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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