View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18375_high_1 (Length: 990)
Name: NF18375_high_1
Description: NF18375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18375_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 566; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 385 - 981
Target Start/End: Complemental strand, 11390842 - 11390243
Alignment:
| Q |
385 |
gaaatagagaggtgaatgcatgacatttttattaattccctttttgcttagagaaagtcacaccctacttgcaataac---tcagtcaaaagatgcatgc |
481 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
11390842 |
gaaatagagaggtgaatgcatgacatttttattaattccctttttgcttagagaaagtcacaccctacttacaataacaactcagtcaaaagatgcatgc |
11390743 |
T |
|
| Q |
482 |
atgtccaatttttgattgagtggttatgaaacactcgacgacatgactgcattgaatcataatgtctttcatttgactgcagtggtttgtttgaatacaa |
581 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
11390742 |
atgtccaatttttgattgagtggttatgaaacactcgacgacatgactgcattgaatcataatgtctttcatttgactgcagttgtttgtttgaatacaa |
11390643 |
T |
|
| Q |
582 |
accattaaactcttgcattgcatgtttagtcaaaaaccaaaatagttgaatcttatcatgttagctaagtctcatttgactattcagaaaacatgcaatg |
681 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11390642 |
accattaaactcttgcattgcatgtttagtcaaaaagcaaaatagttgaatcttatcatgttagctaagtctcatttgactattcagaaaacatgcaatg |
11390543 |
T |
|
| Q |
682 |
gtttggtttgaaaaatcaaaatcaacaatctacttatttccattcattcattcctcgttttatttccattcaattactaacaatgtcatcatcaccaatc |
781 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11390542 |
gtttggtttgaaaaatcaaaatcaacaatctacttatttccattcattcattcctcgttttatttccattcaattactaacaatgtcatcatcaccaatc |
11390443 |
T |
|
| Q |
782 |
aacactccttctccaccaccttatgaccgtgttaaagcggtgaaagaattcgatgaaaccaaattaggtgtaaaaggcctaacagactccggaatcaaaa |
881 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11390442 |
aacactccttctccaccaccttatgaccgtgttaaagcggtgaaagaattcgatgaaaccaaattaggtgtaaaaggcctaacagactccggaatcaaaa |
11390343 |
T |
|
| Q |
882 |
ccatcccatcattcttcatccatccactcgaaactctatccgacctcattccacgatcagatttcccccaaccggaaattcccaccatcgacctctctgc |
981 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11390342 |
ccatcccatcattcttcatccatccacccgaaactctatccgacctcactccacgatcagatttcccccaaccggaaattcccaccatcgacctctctgc |
11390243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 17 - 376
Target Start/End: Complemental strand, 11391235 - 11390876
Alignment:
| Q |
17 |
acatttagatatagaaatttgcatgtttaaaatggataatatattaatatgtatcaaacatctaacattgatgatctatgttacataatcacttgtcata |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
11391235 |
acatttagatatagaaatttgcatgtttaaaatggataatatattaatatgtatcaaacatctagcattgatgatctatgttacataatcacttgtcata |
11391136 |
T |
|
| Q |
117 |
gattttgattcttccctgaatgttgtagctaacggtaaataatttgactccatcgacctatttgttaccataattttctttctttttcttactcaagtta |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11391135 |
gattttgattcttccctgaatgttgtagctaacggtaaataatttgactccatcgacctatttgttaccataattttctttctttttcttactcaagtta |
11391036 |
T |
|
| Q |
217 |
aattgacttttaaccgttgataacactttcatggttaaaactaatttaacaagtttacggtaagagtcatccatgcactttcgactctttgtcttttata |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11391035 |
aattgacttttaaccgttgataacactttcatggttaaaactaatttaacaagtttacggtaagagtcatccatgcactttcgactctttgtcttttata |
11390936 |
T |
|
| Q |
317 |
tgtgagttattgaatgtgctcatgtcgttgtgatccttcatttattttgtttagaagaaa |
376 |
Q |
| |
|
| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11390935 |
tatgagttattgaatgtgcttatgtcgttgtgatccttcatttattttgtttagaagaaa |
11390876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 795 - 978
Target Start/End: Original strand, 11433750 - 11433933
Alignment:
| Q |
795 |
caccaccttatgaccgtgttaaagcggtgaaagaattcgatgaaaccaaattaggtgtaaaaggcctaacagactccggaatcaaaaccatcccatcatt |
894 |
Q |
| |
|
||||||| || |||||||| ||||| ||||||||||||| ||||| |||| || ||||||||| ||| |||||||||||||||||||| ||||| || |
|
|
| T |
11433750 |
caccaccctacgaccgtgtgaaagccttgaaagaattcgacgaaacaaaatccggcgtaaaaggcataatcgactccggaatcaaaaccattccatcttt |
11433849 |
T |
|
| Q |
895 |
cttcatccatccactcgaaactctatccgacctcattccacgatcagatttcccccaaccggaaattcccaccatcgacctctc |
978 |
Q |
| |
|
|||||||||||||| ||||| ||||| ||||||| ||||||||||||||||||||||||| |||| ||||| ||||||||||| |
|
|
| T |
11433850 |
cttcatccatccacctgaaaccctatctgacctcactccacgatcagatttcccccaaccgaaaatccccacaatcgacctctc |
11433933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 815 - 978
Target Start/End: Original strand, 11423145 - 11423308
Alignment:
| Q |
815 |
aaagcggtgaaagaattcgatgaaaccaaattaggtgtaaaaggcctaacagactccggaatcaaaaccatcccatcattcttcatccatccactcgaaa |
914 |
Q |
| |
|
||||| |||||||||||||| ||||| |||| || ||||||||| ||| |||||||||||||||||||| ||||| |||||||||||||||| |||| |
|
|
| T |
11423145 |
aaagccgtgaaagaattcgacgaaacaaaatccggcgtaaaaggcttaatcgactccggaatcaaaaccattccatctttcttcatccatccacctgaaa |
11423244 |
T |
|
| Q |
915 |
ctctatccgacctcattccacgatcagatttcccccaaccggaaattcccaccatcgacctctc |
978 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
11423245 |
tcctatctgacctcactccacgatcagatttcccccaaccggaaatccccacaatcgacctctc |
11423308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 821 - 978
Target Start/End: Original strand, 11427898 - 11428055
Alignment:
| Q |
821 |
gtgaaagaattcgatgaaaccaaattaggtgtaaaaggcctaacagactccggaatcaaaaccatcccatcattcttcatccatccactcgaaactctat |
920 |
Q |
| |
|
|||||||||||||||||||| |||| | ||||||||| ||| |||| ||||||||||||||| ||||| ||||| || || |||| ||||||||||| |
|
|
| T |
11427898 |
gtgaaagaattcgatgaaacaaaatccgacgtaaaaggcttaatcgacttcggaatcaaaaccattccatctttctttattcacccacccgaaactctat |
11427997 |
T |
|
| Q |
921 |
ccgacctcattccacgatcagatttcccccaaccggaaattcccaccatcgacctctc |
978 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
11427998 |
ccgatctcactccacgatcagatttcccccaaccagaaattcccacaatcgacctctc |
11428055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University