View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18375_high_14 (Length: 286)
Name: NF18375_high_14
Description: NF18375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18375_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 18 - 279
Target Start/End: Complemental strand, 32465725 - 32465462
Alignment:
| Q |
18 |
atatggaccaagacttgcaactatctgtctaatttgcatctcaccaaccttaaaataatagacccatacaagaagtaaacacaaactatagttggtatta |
117 |
Q |
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| T |
32465725 |
atatggaccaagacttgcaactatctgtctaatttgcatctcaccaaccttaaaataatagacccatacaagaagtaaacacaaactatagttggtataa |
32465626 |
T |
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| Q |
118 |
aatataaatgcttgaataatgaagatacatacaag--nnnnnnnnnncctacgtattagctttgaaataatatagaaataaatcaaatttgatgagccat |
215 |
Q |
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| T |
32465625 |
aatataaatgcttgaatcatgaagatacatacaagaagaaaaaaaaacctacgtattagctttgaaataatatagaaataaatcaaatttgatgagccat |
32465526 |
T |
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| Q |
216 |
tttagaccatcttaaccagcagcataccacattatactctctcactctctccctcttcatctca |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32465525 |
tttagaccatcttaaccagcagcataccacattatactctctcattctctccctcttcatctca |
32465462 |
T |
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