View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18375_high_2 (Length: 872)

Name: NF18375_high_2
Description: NF18375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18375_high_2
NF18375_high_2
[»] chr1 (2 HSPs)
chr1 (18-872)||(29103720-29104562)
chr1 (18-856)||(29089459-29090285)


Alignment Details
Target: chr1 (Bit Score: 770; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 770; E-Value: 0
Query Start/End: Original strand, 18 - 872
Target Start/End: Original strand, 29103720 - 29104562
Alignment:
Q  18 attttccggcaatgacgaaaacacttctccccacgctactctctcgtacttctctatcaactttttcaccttctccatctgattcaacaaccaatcgtcg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  29103720 attttccggcaatgacgaaaacacttctccccacgctactctctcgtacttctctatcaactttttcaccttctccatgtgattcaacaaccaatcgtcg 29103819  T
Q  118 ccgagaacgtattgcaagttcgattgacgcaccttctccaccacgtgccggagattgtttgcgagaaatagatatgataacgatacattcttgcattgtt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29103820 ccgagaacgtattgcaagttcgattgacgcaccttctccaccacgtgccggagattgtttgcgagaaatagatatgataacgatacattcttgcattgtt 29103919  T
Q  218 tcgatttgctatcaattttacaaagaagaaccagaatcagccacgctattcgaacggaaaatccagtctccatttcaggagtattgtttgatgattctgg 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29103920 tcgatttgctatcaattttacaaagaagaaccagaatcagccacgctattcgaacggaaaatccagtctccatttcaggagtattgtttgatgattctgg 29104019  T
Q  318 actgtataagtaagattctggcaacggtgacttcgacagaggaggaatgtcaaagaatatctcagagagcacgttgctgtaatctgcaagagtaatgaga 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29104020 actgtataagtaagattctggcaacggtgacttcgacagaggaggaatgtcaaagaatatctcagagagcacgttgctgtaatctgcaagagtaatgaga 29104119  T
Q  418 tactgcattgtttcctttgtcagggaatgaactccgccgaaatttgccgctgatttggaagaatccttcaatattgtagactcaaattccaaaagaagat 517  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29104120 tactgcattgtttcctctgtcagggaatgaactccgccgaaatttgccgctgatttggaagaatccttcaatattgtagactcaaattccaaaagaagat 29104219  T
Q  518 ttcgtacacactcgattaatcgatgttgcgaattatatgcttgagatttaacgactgctattgaattaaacgagaaaattgattcaatctccggcaacaa 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  29104220 ttcgtacacactcgattaatcgatgttgcgaattatatgcttgagatttaacgactgctgttgaattaaacgagaaaattgattcaatctccggcaacaa 29104319  T
Q  618 cacggtgattgtagcgtacatatcaagcaatcgaaaaatcttctccggctttgatttctttgtttttgcaacgacttcaggaaatctgaaaagcaaaata 717  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  29104320 cacggtgattgtagcgtacatatcaagcaagcgaaaaatcttctccggctttgatttctttgtttttgcaacgacttcaggaaatcttaaaagtaaaata 29104419  T
Q  718 gctccattcttagaaatctcagcaaaacaagcttctttgatggaattattgatggaattcgaagcgaagattcgatcgcagaggttcctctctccggcga 817  Q
    ||||||| ||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29104420 gctccatccttagaaatctcagcaaaacaagcttct------------ttgatggaattcgaagcgaagattcgatcgcagaggttcctctctccggcga 29104507  T
Q  818 agagcgtcctcactgagatcttaaccgcttctaaccaactgatgatgtccatctc 872  Q
    |||||||||||||||||||||||||||| |||||||||||| |||| | ||||||    
T  29104508 agagcgtcctcactgagatcttaaccgcctctaaccaactgttgattttcatctc 29104562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 247; E-Value: 1e-136
Query Start/End: Original strand, 18 - 856
Target Start/End: Original strand, 29089459 - 29090285
Alignment:
Q  18 attttccggcaatgacgaaaacacttctccccacgctactctctcgtacttctctatcaactttttcaccttctccatctgattcaacaaccaatcgtcg 117  Q
    ||||| ||||||||||| || |||| | ||||| |||| |||||| |||||||| ||||||  ||||||||||||||| || |||||||||||||||||     
T  29089459 atttttcggcaatgacgtaaccactgcgccccatgctattctctcatacttctcaatcaaccgtttcaccttctccatgtgcttcaacaaccaatcgtca 29089558  T
Q  118 ccgagaacgtattgcaagttcgattgacgcaccttctccaccacgtgccggagattgtttgcgagaaatagatatgataacgatacattcttgcattgtt 217  Q
    || ||||||||||||||||||||   ||| |||||||||||||||||  | ||||||||||| ||||||||||||||||| ||||  ||||||||||| |    
T  29089559 ccaagaacgtattgcaagttcgacacacgaaccttctccaccacgtgttgaagattgtttgcaagaaatagatatgataaggatatgttcttgcattgct 29089658  T
Q  218 tcgatttgctatcaattttacaaagaagaaccagaatcagccacgctattcgaacggaaaatccagtctccatttcaggagtattgtttgatgattctgg 317  Q
    ||||||||   || ||||| || |||||||| ||||||| |||||||||||||| ||||||| |||| || ||||| |  |  | ||| |||||||||||    
T  29089659 tcgatttgacgtcgattttgcagagaagaactagaatcaaccacgctattcgaatggaaaattcagtttcaatttccgtcgagtagttggatgattctgg 29089758  T
Q  318 actgtataagtaagattctggcaacggtgacttcgacagaggaggaatgtcaaagaatatctcagagagcacgttgctgtaatctgcaagagtaatgaga 417  Q
    |||||||||||||||||||||||| || || ||| ||   ||||||||||| |||||||| ||||| ||||||||||||||||||| |||  |  | |||    
T  29089759 actgtataagtaagattctggcaatggggaattcaacgacggaggaatgtcgaagaatatttcagaaagcacgttgctgtaatctgtaagcttggtaaga 29089858  T
Q  418 tactgcattgtttcctttgtcagggaatgaactccgccgaaatttgccgctgatttggaagaatccttcaatattgtagactcaaattccaaaagaagat 517  Q
    || |||||||||| | |||| ||||||||||  ||||||||||| |||   ||||||||||| |||||||  ||||  ||||| |||||  | | || ||    
T  29089859 tattgcattgtttgcgttgtaagggaatgaataccgccgaaattcgccagcgatttggaagagtccttcaggattgcggactcgaattctgagaaaatat 29089958  T
Q  518 ttcgtacacactcgattaatcgatgttgcgaattatatgcttgagatttaacgactgctattgaattaaacgagaaaattgattcaatctccggcaacaa 617  Q
    ||| |||| | || |  | ||  ||||| |||||||||||||||||||||||  | |   ||||||| || |||||||| ||||||| |||||| |||||    
T  29089959 ttcttacagattcaacgagtctttgttgtgaattatatgcttgagatttaacaccagaggttgaattgaaagagaaaatcgattcaacctccggtaacaa 29090058  T
Q  618 cacggtgattgtagcgtacatatcaagcaatcgaaaaatcttctccggctttgatttctttgtttttgcaacgacttcaggaaatctgaaaagcaaaata 717  Q
    || ||||||||| || |||||||||||||| || ||||||||||||||  |  ||||||||||||| ||||||| |||||||||||  || || | | ||    
T  29090059 catggtgattgtggcatacatatcaagcaaacggaaaatcttctccggtgtccatttctttgttttcgcaacgaattcaggaaatcgtaagagaagagta 29090158  T
Q  718 gctccat-tcttagaaatctcagcaaaacaagcttctttgatggaattattgatggaattcgaagcgaagattcgatcgcagaggttcctctctccggcg 816  Q
    ||||||| |||| ||||| ||| ||||||||||||||             ||||||||||||||||||| ||||| ||||||||||| |||||||| |      
T  29090159 gctccatctctt-gaaatttcaccaaaacaagcttct------------ctgatggaattcgaagcgaaaattcgttcgcagaggtttctctctccagaa 29090245  T
Q  817 aagagcgtcctcactgagatcttaaccgcttctaaccaac 856  Q
    ||||| || ||||||||||||||||| || ||||||||||    
T  29090246 aagagtgttctcactgagatcttaactgcctctaaccaac 29090285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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