View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18375_high_22 (Length: 234)

Name: NF18375_high_22
Description: NF18375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18375_high_22
NF18375_high_22
[»] chr8 (4 HSPs)
chr8 (16-107)||(18848553-18848644)
chr8 (136-216)||(18848673-18848753)
chr8 (18-102)||(36075548-36075632)
chr8 (136-216)||(36075666-36075746)
[»] chr1 (4 HSPs)
chr1 (18-102)||(52977536-52977620)
chr1 (18-102)||(52683374-52683458)
chr1 (140-216)||(52683496-52683572)
chr1 (136-216)||(52977654-52977734)
[»] chr3 (2 HSPs)
chr3 (18-102)||(33718990-33719074)
chr3 (136-216)||(33718876-33718956)
[»] chr7 (2 HSPs)
chr7 (137-216)||(18932182-18932261)
chr7 (18-100)||(18932296-18932378)


Alignment Details
Target: chr8 (Bit Score: 92; Significance: 8e-45; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 18848553 - 18848644
Alignment:
Q  16 atgaacctagacatggggtgcttggtgcaagctctaactggttttctatgagctattggaacatcaagaataggatcatgaaaatcatgaaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18848553 atgaacctagacatggggtgcttggtgcaagctctaactggttttctatgagctattggaacatcaagaataggatcatgaaaatcatgaaa 18848644  T

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Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 136 - 216
Target Start/End: Original strand, 18848673 - 18848753
Alignment:
Q  136 gtaggttgattctccctcagttcagattcatgactgtgctgaggaatcaagttttctactaccttatcatggttccttctt 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18848673 gtaggttgattctccctcagttcagattcatgactgtgctgaggaatcaagttttctactaccttatcatggttccttctt 18848753  T

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Target: chr8; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 36075548 - 36075632
Alignment:
Q  18 gaacctagacatggggtgcttggtgcaagctctaactggttttctatgagctattggaacatcaagaataggatcatgaaaatca 102  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  36075548 gaacctagacatggggtgcttggttcaagctctaactggtttcctatgagctattggaacatcaagaataggatcatgaaaatca 36075632  T

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Target: chr8; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 136 - 216
Target Start/End: Original strand, 36075666 - 36075746
Alignment:
Q  136 gtaggttgattctccctcagttcagattcatgactgtgctgaggaatcaagttttctactaccttatcatggttccttctt 216  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  36075666 gtaggttgattctccctcggttcagattcatgactgtgctgaggaatcaagtcttctactaccttatcatggttctttctt 36075746  T

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Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 52977536 - 52977620
Alignment:
Q  18 gaacctagacatggggtgcttggtgcaagctctaactggttttctatgagctattggaacatcaagaataggatcatgaaaatca 102  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52977536 gaacctagatatggggtgcttggtgcaagctctaactggttttctatgagctattggaacatcaagaataggatcatgaaaatca 52977620  T

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Target: chr1; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 52683374 - 52683458
Alignment:
Q  18 gaacctagacatggggtgcttggtgcaagctctaactggttttctatgagctattggaacatcaagaataggatcatgaaaatca 102  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  52683374 gaacctagacatggggtgcttggtgcaagctctaactggtttcatatgagctattggaacatcaagaataggatcatgaaaatca 52683458  T

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Target: chr1; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 140 - 216
Target Start/End: Original strand, 52683496 - 52683572
Alignment:
Q  140 gttgattctccctcagttcagattcatgactgtgctgaggaatcaagttttctactaccttatcatggttccttctt 216  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||    
T  52683496 gttgattctccctcggttcagattcatgactatgctgaggaatcaagtcttctactaccttatcatggttctttctt 52683572  T

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Target: chr1; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 136 - 216
Target Start/End: Original strand, 52977654 - 52977734
Alignment:
Q  136 gtaggttgattctccctcagttcagattcatgactgtgctgaggaatcaagttttctactaccttatcatggttccttctt 216  Q
    |||||||||||||||||| ||| |||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||    
T  52977654 gtaggttgattctccctcggtttagattcatgactgtgctgcggaatcaagtcttctactaccttaccatggttccttctt 52977734  T

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Target: chr3 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 33719074 - 33718990
Alignment:
Q  18 gaacctagacatggggtgcttggtgcaagctctaactggttttctatgagctattggaacatcaagaataggatcatgaaaatca 102  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  33719074 gaacctagacatggggtgcttggtgcaagctctaactggtttcctatgagctattggaacatcaagaatacgatcatgaaaatca 33718990  T

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Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 136 - 216
Target Start/End: Complemental strand, 33718956 - 33718876
Alignment:
Q  136 gtaggttgattctccctcagttcagattcatgactgtgctgaggaatcaagttttctactaccttatcatggttccttctt 216  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  33718956 gtaggttgattctccctcggttcagattcatgactgtgctgaggaatcaagtcttctactaccttatcatggttctttctt 33718876  T

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Target: chr7 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 137 - 216
Target Start/End: Complemental strand, 18932261 - 18932182
Alignment:
Q  137 taggttgattctccctcagttcagattcatgactgtgctgaggaatcaagttttctactaccttatcatggttccttctt 216  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  18932261 taggttgattctccctcggttcagattcatgactgtgctgaggaatcaagtcttctactaccttatcatggttccttctt 18932182  T

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Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 18932378 - 18932296
Alignment:
Q  18 gaacctagacatggggtgcttggtgcaagctctaactggttttctatgagctattggaacatcaagaataggatcatgaaaat 100  Q
    |||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  18932378 gaacctagacatagggtgcttggtgcaagccctaactggtttcctatgagctattggaaaatcaagaataggatcatgaaaat 18932296  T

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