View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18375_high_3 (Length: 864)
Name: NF18375_high_3
Description: NF18375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18375_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-151; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 487 - 851
Target Start/End: Complemental strand, 40104764 - 40104396
Alignment:
| Q |
487 |
tgtgttagccaagtcaaattctaattctataggtaacatttcgatcacattactaatttttctgaattatagggaccggctggattatgacaatttaaac |
586 |
Q |
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| T |
40104764 |
tgtgttagccaagtcaaattctaattctataggtgacatttcgatcacattactaatttttttgaattatatggaccggctggattatgacaatttaaac |
40104665 |
T |
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| Q |
587 |
gaggaatgtactgaaata---agtgatgaa-tttttatggtagtatagttttgatcaaaaatatcnnnnnnnnt-tatactaaagagcgtacgtgaagaa |
681 |
Q |
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| T |
40104664 |
gaggaatgtactgaaatactaagtgatgaaatttttatggtagtatagttttgatcaaaaa-atcaaaagaaatgtatactaaagagcgtgcgtggagaa |
40104566 |
T |
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| Q |
682 |
aacaagagtatttttaaagatatctccaagtagtcttctaaagatggttgtggagattgatagccgtaagcaaacaaataccgttgagttgatagactca |
781 |
Q |
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| T |
40104565 |
aacaagagtatttttaaagatacctccaagtagtcttctaaagatggttgtggagattgatagccgtaagcaaacaaacaccgtagagttgatagactca |
40104466 |
T |
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| Q |
782 |
acatatataatgatattatacattgattcaatgcatctttggaagcggcgaatcaagttcaattctgatg |
851 |
Q |
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| T |
40104465 |
acatatataatgatattatacattgattcaaggcatctttggaagcggcgaatcaagttcaattctgatg |
40104396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 180; E-Value: 1e-96
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 40105197 - 40105018
Alignment:
| Q |
18 |
attttcagttggagtgatgagtcagcaagagaaatgaagaaactgtgttaagaagtgagattatcttgattttgatgctaattattacatcaaagtgggt |
117 |
Q |
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| T |
40105197 |
attttcagttggagtgatgagtcagcaagagaaatgaagaaactgtgttaagaagtgagattatcttgattttgatgctaattattacatcaaagtgggt |
40105098 |
T |
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| Q |
118 |
cctggaatttgatctcatttattataatttattattttattgggacaagtaagcacgtcggcaactcatcttatgcctct |
197 |
Q |
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| T |
40105097 |
cctggaatttgatctcatttattataatttattattttattgggacaagtaagcacgtcggcaactcatcttatgcctct |
40105018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 214 - 363
Target Start/End: Complemental strand, 40105033 - 40104884
Alignment:
| Q |
214 |
ctcatcttatgcctctatcattcacgtggacgcttgattaaacaatgttcacttannnnnnnnnnnnnnnnncatactcttgagtaagatatgctcattt |
313 |
Q |
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| T |
40105033 |
ctcatcttatgcctctaccattcacgtggacgcttgattaaacaatgttcacttattttttatttattttttcatactcttgagtaagatatgctcattt |
40104934 |
T |
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| Q |
314 |
acttttcgtcttgaaagtgacattcatgattcatgttagatggattattg |
363 |
Q |
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| T |
40104933 |
acttttcgtcttgaaagtgacattcatgattcatgttagatggattattg |
40104884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 434 - 468
Target Start/End: Complemental strand, 40104806 - 40104772
Alignment:
| Q |
434 |
aatgaccagtcatatgttgttgaacagtcttatat |
468 |
Q |
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| T |
40104806 |
aatgaccagtcatatgttgttgaacagtcttatat |
40104772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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