View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18375_high_5 (Length: 735)

Name: NF18375_high_5
Description: NF18375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18375_high_5
NF18375_high_5
[»] chr3 (1 HSPs)
chr3 (18-654)||(53462636-53463272)


Alignment Details
Target: chr3 (Bit Score: 633; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 633; E-Value: 0
Query Start/End: Original strand, 18 - 654
Target Start/End: Original strand, 53462636 - 53463272
Alignment:
Q  18 ccttctctacgccaccactcgtcaccgttcagattcaaatccaccgttgaagccggtcaccgaaaagggtctctcccctttagatcttgaaaagcttcct 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53462636 ccttctctacgccaccactcgtcaccgttcagattcaaatccaccgttgaagccggtcaccgaaaagggtctctcccctttagatcttgaaaagcttcct 53462735  T
Q  118 aaaatcaccggtaaggaattgctcgcgcccaccgaatgcgccgtttgccttgacgatatcgttgatgaacaaccggctcgtctgttacccggttgtaacc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53462736 aaaatcaccggtaaggaattgctcgcgcccaccgaatgcgccgtttgccttgacgatatcgttgatgaacaaccggctcgtctgttacccggttgtaacc 53462835  T
Q  218 acgcttttcatctccaatgtgccgacacgtggctctccaaacaccctatgtgtcctctatgtagagcaaaacttgaccctcagagtctcaattctgagag 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53462836 acgcttttcatctccaatgtgccgacacgtggctctccaaacaccctatgtgtcctctatgtagagcaaaacttgaccctcagagtctcaattctgagag 53462935  T
Q  318 tccctgctgaacgatcgatcaaaattcattggggcatgtttatatcagaataacatgaattactctgatcatcgttgcgatattaaacatgcacttcatg 417  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53462936 tccctgctgaacgatcgatcaaaattcattggtgcatgtttatatcagaataacatgaattactctgatcatcgttgcgatattaaacatgcacttcatg 53463035  T
Q  418 acattgttatacagttgtgcacgaaaatcttgatattgagataaaattataagaaattgccgtagttactgcggtaactttctgaaattgtcgcatttta 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53463036 acattgttatacagttgtgcacgaaaatcttgatattgagataaaattataagaaattgccgtagttactgcggtaactttctgaaattgtcgcatttta 53463135  T
Q  518 ctgtgtatatgcaaatgaagcggcgtgcggcagaaggatagaagggttattacaaataacttatgttctaattttaggtttattttgttttattgtgaat 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53463136 ctgtgtatatgcaaatgaagcggcgtgcggcagaaggatagaagggttattacaaataacttatgttctaattttaggtttattttgttttattgtgaat 53463235  T
Q  618 tattagtagctgctaatgtagtgatccaaaaatgttg 654  Q
    |||||||||||||||||||||||||||||||||||||    
T  53463236 tattagtagctgctaatgtagtgatccaaaaatgttg 53463272  T

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