View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18375_low_10 (Length: 342)
Name: NF18375_low_10
Description: NF18375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18375_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 16 - 324
Target Start/End: Complemental strand, 14513587 - 14513279
Alignment:
| Q |
16 |
aatatccaaggtgaagaacaaaaccaatgaaaaagacacataaaccttttcattcattaatttcaagtttaagaacaagaatcttaatatcactacaata |
115 |
Q |
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| T |
14513587 |
aatatccaaggtgaagaacaaaaccaatgaaaaagacacataaaccttctcattgattaatttcaagtttaggaacaagaatcttaatatcactacaata |
14513488 |
T |
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| Q |
116 |
tttccttcacctactcatccaaatgttgcactctcacatacaccacaatcaccaatttctcttcacaaacctcccaatttccttaacaacccaccacttt |
215 |
Q |
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| T |
14513487 |
tttccttcacctactcatccaaatgttgcactctcacttacaccacaatcaccaatttctcttcacaaacctcccaatttccttaacaacccaccacttt |
14513388 |
T |
|
| Q |
216 |
tcttcaccatctcctcttcataaatttcatcataattctcactctatttatgccattaatccttctcaagaagtatttttaccgttgctaaataaattaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14513387 |
tcttcaccatctcctcttcataaatttcatcataattctcacactatttatgccattaatccttctcaagaagtatttttaccgttgctaaataaattaa |
14513288 |
T |
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| Q |
316 |
ccactgcaa |
324 |
Q |
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|||||||| |
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| T |
14513287 |
tcactgcaa |
14513279 |
T |
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