View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18375_low_12 (Length: 335)
Name: NF18375_low_12
Description: NF18375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18375_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 13 - 320
Target Start/End: Complemental strand, 45315352 - 45315045
Alignment:
| Q |
13 |
aatatctagcatggttgtgtaagtgaattggtcgtgcttaaaccctttgagacgagaagcccagttgaagaacaaccacgctttctccattggagggtgt |
112 |
Q |
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| T |
45315352 |
aatatctagcatggttgtgtaagtgaattggtcgtgcttaaaccctttgagacgagaagcccagttgaagaacaaccacgctttctccattggagggtgt |
45315253 |
T |
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| Q |
113 |
gatttgagaacctgattgacagtgtatgagtcccatttcaaagggagattttgaagctgttgttgagcggaatcctaagatgaatactttaggtttctgt |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
45315252 |
gatttgagaacctgattgacagtgtatgagtcccatttcaaagggagattttgaagctgttgttgagcggaatcccaagatgaatactttagggttctgt |
45315153 |
T |
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| Q |
213 |
aaatattcccaattacgttcctcatgtactctctgctgctgggtactctctgggaatgaatgttttttgaaggaacgaagaggttttggagaaatccatg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45315152 |
aaatattcccaattacgttcctcatgtactctctgctgctgggtactctctgggaatgaatgttttttgaaggaacgaagaggttttggagaaatccatg |
45315053 |
T |
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| Q |
313 |
aagctttg |
320 |
Q |
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|||||||| |
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| T |
45315052 |
aagctttg |
45315045 |
T |
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