View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18375_low_13 (Length: 301)
Name: NF18375_low_13
Description: NF18375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18375_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 10 - 285
Target Start/End: Original strand, 41283612 - 41283893
Alignment:
| Q |
10 |
agtgagaagaatcacctctaatgatgcacgattccctaggatgtataacaccagtgttaggtcgtacaaagtacttagtcggtgaagtggtcttcaccta |
109 |
Q |
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| T |
41283612 |
agtgacaagaatcacctctaatgatgcacgattccctaggatgtataacaccagtgttaggtcgtacaaagtacttagtcggtgaagtggtcttcaccta |
41283711 |
T |
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| Q |
110 |
gca------aaagcaaaataatcagtatgaagccatgcactaaagatccagctttctaaaaagaataagtttgtccctgtaaggagagttaaaagggtac |
203 |
Q |
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| T |
41283712 |
gcaaaagcaaaagcaaaataatcagtatgaagccatgcactaaagatccagctttctaaaaagaataagtttgtccctgtaaggagagttaaaagggtac |
41283811 |
T |
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| Q |
204 |
cttaaaagcaatgaagtactctgtcttattcaaaacattaagatcgcaaaatgattgcctctccaactcaactggtaacatg |
285 |
Q |
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| T |
41283812 |
cttaaaagcaatgaagtactctgtcttattcaaaacattaagatcgcaaaatgattgcctctccaactcaactggtaacatg |
41283893 |
T |
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Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 113
Target Start/End: Complemental strand, 4206204 - 4206111
Alignment:
| Q |
20 |
atcacctctaatgatgcacgattccctaggatgtataacaccagtgttaggtcgtacaaagtacttagtcggtgaagtggtcttcacctagcaa |
113 |
Q |
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||||||||| ||||| || || |||| |||||| ||||| |||||||| ||||||||||||||||| | ||||||||||| || ||||||||| |
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| T |
4206204 |
atcacctctgatgatacatgagtcccaaggatgaataaccccagtgtttggtcgtacaaagtacttctttggtgaagtggttttgacctagcaa |
4206111 |
T |
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