View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18375_low_15 (Length: 267)
Name: NF18375_low_15
Description: NF18375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18375_low_15 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 11 - 267
Target Start/End: Complemental strand, 8517934 - 8517679
Alignment:
| Q |
11 |
agagagaaactaatgagaaatggacaaattggaattggaggagttatggggatgaattcataaatggtgcnnnnnnnnaattcatctggaactggaactt |
110 |
Q |
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| T |
8517934 |
agagagaaactaatgagaaatggacaaattggaattggaggagttatggggatgaattcataaatggtgcttttttt-aattcatctggaactggaactt |
8517836 |
T |
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| Q |
111 |
gtgatccgttatattcacaatctcaaaatattattgctgctaaggcttccatggtgacttcattaacaagaaatgcaggaccccttggttgtgttgctgg |
210 |
Q |
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| T |
8517835 |
gtgatccgttatattcacaatctcaaaatattattgctgctaaggcctccatggtgacttcattaacaagcaatgcaggacctcttggttgtgttgctgg |
8517736 |
T |
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| Q |
211 |
caaagcatgttaatttcaacaaatatttgcttgtttttactttattttgttgttatg |
267 |
Q |
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| T |
8517735 |
caaagcatgttaatttcaacaaatatttgcttgtttttactttattttgttgttatg |
8517679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 119 - 238
Target Start/End: Complemental strand, 8525687 - 8525568
Alignment:
| Q |
119 |
ttatattcacaatctcaaaatattattgctgctaaggcttccatggtgacttcattaacaagaaatgcaggaccccttggttgtgttgctggcaaagcat |
218 |
Q |
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| T |
8525687 |
ttatattcatcatctcaaaactttgttgctgctaaggcatccatggtgcctttattaacactcaacgcaggacctcttgattgtgttgctgacaaagcat |
8525588 |
T |
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| Q |
219 |
gttaatttcaacaaatattt |
238 |
Q |
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| T |
8525587 |
gttaatttcaccaaatattt |
8525568 |
T |
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