View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18375_low_22 (Length: 237)
Name: NF18375_low_22
Description: NF18375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18375_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 167; Significance: 1e-89; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 13 - 215
Target Start/End: Original strand, 6520070 - 6520272
Alignment:
| Q |
13 |
tcataggtatatagctacttctgaggagttttctggcattattagaatagctttgttgccggattctgattcaaaaactgaagctgttcttgataggttc |
112 |
Q |
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| T |
6520070 |
tcataggtatatagctacttctgaggagttttctggcattattagaatagctttgtttccggattctgattcaaaaactgaagctgctcttgataggttc |
6520169 |
T |
|
| Q |
113 |
agtagttgttaccctgtgagcggtgatgctgttttcacaacaccattctgtcttgagtataaatggcagaagaagggttcaggtgatttgctgctgttag |
212 |
Q |
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| T |
6520170 |
agttgttgttaccctgtgagtggtaatgctgtttttacaacacaattctgtgttgagtataaatggcagaagaagggttcaggtgatttgctactgttag |
6520269 |
T |
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| Q |
213 |
cac |
215 |
Q |
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||| |
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| T |
6520270 |
cac |
6520272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 41 - 215
Target Start/End: Complemental strand, 6528846 - 6528672
Alignment:
| Q |
41 |
ttttctggcattattagaatagctttgttgccggattctgattcaaaaactgaagctgttcttgataggttcagtagttgttaccctgtgagcggtgatg |
140 |
Q |
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| T |
6528846 |
ttttctggcacaattcgaatagctttattgccggattctgattcaaaacatgaggctgttcttgacaggtattgtttctgttatcctgtgtcaggtgatg |
6528747 |
T |
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| Q |
141 |
ctgttttcacaacaccattctgtcttgagtataaatggcagaagaagggttcaggtgatttgctgctgttagcac |
215 |
Q |
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| T |
6528746 |
ctatactcagagaaccattttgtgttgagtataaatgggagaagaagggttggggtgatttgttgatgttagcac |
6528672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 62 - 191
Target Start/End: Complemental strand, 6465959 - 6465830
Alignment:
| Q |
62 |
gctttgttgccggattctgattcaaaaactgaagctgttcttgataggttcagtagttgttaccctgtgagcggtgatgctgttttcacaacaccattct |
161 |
Q |
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| T |
6465959 |
gctttgttgcctgattctgatttcaagcatgaagatgttcttgacaggtttagttcttgttaccctttatgtggtgatgctgtttttacaaaaccatttt |
6465860 |
T |
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| Q |
162 |
gtcttgagtataaatggcagaagaagggtt |
191 |
Q |
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| T |
6465859 |
gtgttgagtataaatgggagaagaaaggtt |
6465830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 127
Target Start/End: Original strand, 6472565 - 6472663
Alignment:
| Q |
29 |
acttctgaggagttttctggcattattagaatagctttgttgccggattctgattcaaaaactgaagctgttcttgataggttcagtagttgttaccct |
127 |
Q |
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| T |
6472565 |
acttctgaggccttttccggcatgattcggatagctttgttgccggattccaattcaaaaaacgaagatgtccttgataagtacagttcttgttaccct |
6472663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 127
Target Start/End: Original strand, 9664846 - 9664920
Alignment:
| Q |
53 |
attagaatagctttgttgccggattctgattcaaaaactgaagctgttcttgataggttcagtagttgttaccct |
127 |
Q |
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||||| || |||||||||||||||||||||||||||| ||||||||||||||| | ||| || | |||||||||| |
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| T |
9664846 |
attaggattgctttgttgccggattctgattcaaaaaatgaagctgttcttgacaagtttagcacttgttaccct |
9664920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 127
Target Start/End: Original strand, 13535870 - 13535944
Alignment:
| Q |
53 |
attagaatagctttgttgccggattctgattcaaaaactgaagctgttcttgataggttcagtagttgttaccct |
127 |
Q |
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| T |
13535870 |
attaggattgctttgttgccggattctgattcaaaaaatgaagctgttcttgacaagtttagcacttgttaccct |
13535944 |
T |
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