View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18375_low_7 (Length: 502)
Name: NF18375_low_7
Description: NF18375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18375_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 15 - 485
Target Start/End: Original strand, 34880120 - 34880593
Alignment:
| Q |
15 |
ggcatacaatatgagcgaattccccatcacagtaactgctgataggtaaaggcacagctacgaattatcggttcatgtttctcttatgcggtagccagct |
114 |
Q |
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| T |
34880120 |
ggcatacaatatgagcgaattccccatcacaataactgctgataggtaaaggcacagctacgaattatcggttcatgtttctcttatgcggtagccagct |
34880219 |
T |
|
| Q |
115 |
tcctagagtacacaatgtacataggatccgagcgtccaggatttggagaaatatccacagcctacnnnnnnnnn---gttacattgacctcagaattgat |
211 |
Q |
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| T |
34880220 |
tcctagagtacacaatgtacatgggatccgagcgtccaggatttggagaaatatccacagcctacaaaaaaaaaaaagttacattgacctcagaattgat |
34880319 |
T |
|
| Q |
212 |
aacactgtcacatgatcacatcatatacaatcaaatttgtactttcaaatttgtttcatgattagcgaaagaaattatgttttatataggggaaaaagca |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34880320 |
aacactgtcacatgatcacatcatatacaatcaaatttgtactttcaaatttgtttcatgattagcgaaagaaattatgttttatataggggaaaaagca |
34880419 |
T |
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| Q |
312 |
gctgaattaattaaccttctgtcctgctttattttaaagcatactatttggtttgttaataaataatagctgatctttgtcaaaatattttgttattaca |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34880420 |
gctgaattaattaaccttctgtcctgctttattttaaagcatactatttggtttgttaataaataatagctgatctttgtcaaaatattttgttattaca |
34880519 |
T |
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| Q |
412 |
aaaagggaaatgccaattaataagaatagaagtctcagaaaaactgcacatatatcaatatcatgcgacacatt |
485 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
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| T |
34880520 |
aaaagggaaatgccaattaataagaatagaagtctcagaacaactgcacatatatcaatatcatgtgacacatt |
34880593 |
T |
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