View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18375_low_8 (Length: 446)
Name: NF18375_low_8
Description: NF18375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18375_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 392 - 427
Target Start/End: Original strand, 47847703 - 47847738
Alignment:
| Q |
392 |
cttggtgcataagaatatgtcttattctaacttttt |
427 |
Q |
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| T |
47847703 |
cttggtgcataagaatatgtcttattctaacttttt |
47847738 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 230
Target Start/End: Complemental strand, 42409246 - 42409208
Alignment:
| Q |
192 |
acaatacttagcttggctagtaaagtagttcaagtctaa |
230 |
Q |
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| T |
42409246 |
acaatacttagcttgactagtaaagtagttcaagactaa |
42409208 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 168
Target Start/End: Original strand, 1406184 - 1406253
Alignment:
| Q |
95 |
tatcggaacgatatttgatacttggagctctatttaatattaccgactgaaacattaacaacttacaatacata |
168 |
Q |
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| T |
1406184 |
tatcgaaacgacatttgatacttaga----tatttaatattactgacggaaacatcaacaacttacaattcata |
1406253 |
T |
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