View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18375_low_9 (Length: 416)

Name: NF18375_low_9
Description: NF18375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18375_low_9
NF18375_low_9
[»] chr1 (4 HSPs)
chr1 (171-407)||(26617601-26617837)
chr1 (18-381)||(35150343-35150710)
chr1 (20-381)||(9928112-9928478)
chr1 (18-179)||(26616746-26616907)
[»] chr7 (5 HSPs)
chr7 (117-381)||(12077831-12078100)
chr7 (95-314)||(20964055-20964275)
chr7 (261-377)||(9348975-9349096)
chr7 (43-236)||(24409231-24409424)
chr7 (324-364)||(25114008-25114048)
[»] chr5 (1 HSPs)
chr5 (275-381)||(18552639-18552750)
[»] chr4 (2 HSPs)
chr4 (263-314)||(3441766-3441817)
chr4 (156-236)||(32930566-32930646)


Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 171 - 407
Target Start/End: Original strand, 26617601 - 26617837
Alignment:
Q  171 tattatatttgattgtccttttgaagtgcaagtatggcaaatggctggactatggaatgaggtaaatcatacggttctcatcacaaattcgactatagat 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  26617601 tattatatttgattgtccttttgaagtgcaagtatggcaaatggctggactatggaatgaggtaaatcatatggttctcatcacaaattcgactatagat 26617700  T
Q  271 gctatattttccttgttgcaaaatttatcccaggaacatgttcagcgcaactattctttggagtctaaggaagcatcgaaaccttaaactttgggagaat 370  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  26617701 gctatattttccttgttgcaaaatttataccaggaacatgttcagcgcaactattctttggagtctatggaagcattgaaaccttaaactttgggagaat 26617800  T
Q  371 gaaaatgagtttttctcctttatgccccgtctctgtg 407  Q
    |||||||||||||||||||||||||||||||||||||    
T  26617801 gaaaatgagtttttctcctttatgccccgtctctgtg 26617837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 18 - 381
Target Start/End: Original strand, 35150343 - 35150710
Alignment:
Q  18 tatttggaggttgaaagttcatccaaaggtgaagaatcttgtatggcggatgtgtatgggatatttgtcgactcaagttcggcttcaagacaaaggggtt 117  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||||| | ||| |  ||| | |||| |||||||||||||||||||||||||    
T  35150343 tatttggaggttgaaagttcctctaaaggtgaagaatcttgtatggcggatgtgcaggggctgattgccaactcgagttcggcttcaagacaaaggggtt 35150442  T
Q  118 caatgttcaacagaatgcgttagctgtagttctaaccatgaagatcttgcacatattatatttgattgtccttttgaagtgcaagtatggcaaatggctg 217  Q
    || ||||||||| | || ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||| |||||||||    
T  35150443 ca-tgttcaacaaattgtgttagttgtagttctaaccatgaagatcttacacatattatatttgattgtccttttgcagtgcaagtttggaaaatggctg 35150541  T
Q  218 gactatggaatgaggtaaatcatacggttctcatcacaaattcgactatagatgctatattttccttgttgcaaaatttatcccaggaacatgttc---- 313  Q
    ||||||||| ||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||        
T  35150542 gactatggagtgaggtaaatcatgcggttcttatcacaaattcgtctatagatgctatattttccttgttgcaaaatttatcacaagaacatgttcactg 35150641  T
Q  314 -agcgcaactattctttggagtctaaggaagcatcgaaaccttaaactttgggagaatgaaaatgagtt 381  Q
     |  | || |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  35150642 tatggtaaatattctttggagtctgtggaagcatcgaaaccttaaactttgggagaatgaaaatgagtt 35150710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 20 - 381
Target Start/End: Original strand, 9928112 - 9928478
Alignment:
Q  20 tttggaggttgaaagttcatccaaaggtgaagaatcttgtatggcggatgtgtatgggatatttgtcgactcaagttcggcttcaagacaaaggggttca 119  Q
    |||| ||||| ||||||| || |||||||||||||| || |||||||||||| | ||| | |||| |||||| |||| ||||||||||||||||||||||    
T  9928112 tttgcaggttaaaagttcctctaaaggtgaagaatcatgaatggcggatgtgcaggggctgtttgccgactcgagtttggcttcaagacaaaggggttca 9928211  T
Q  120 atgttcaacagaatgcgttagctgtagttctaaccatgaagatcttgcacatattatatttgattgtccttttgaagtgcaagtatggcaaatggctgga 219  Q
    |||||||| | | || ||||||| |||||||||||||||| |||||||||||||||||||| ||||| |||||  | |||||||||||||||||| ||||    
T  9928212 atgttcaataaattgtgttagctctagttctaaccatgaaaatcttgcacatattatattttattgtactttttcaatgcaagtatggcaaatggttgga 9928311  T
Q  220 ctatggaatgaggtaaatcatacggttctcatcacaaattcgactatagatgctatattttccttgttgcaaaatttatcccaggaacatgttcagcg-- 317  Q
    |||||||||||||||||||||  ||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||  |      
T  9928312 ctatggaatgaggtaaatcatgaggttctcatcacagattcaactatagatactatattttccttgttgcaaaatttatcacaggaacatgttcaatgta 9928411  T
Q  318 ---caactattctttggagtctaaggaagcatcgaaaccttaaactttgggagaatgaaaatgagtt 381  Q
       || |||| ||| ||||| |  |||||||||||||||||||||||||||| ||||||||||||||    
T  9928412 tgacagctatacttaggagtttgtggaagcatcgaaaccttaaactttgggaaaatgaaaatgagtt 9928478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 18 - 179
Target Start/End: Original strand, 26616746 - 26616907
Alignment:
Q  18 tatttggaggttgaaagttcatccaaaggtgaagaatcttgtatggcggatgtgtatgggatatttgtcgactcaagttcggcttcaagacaaaggggtt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  26616746 tatttggaggttgaaagttcatccaaaggtgaagaatcttgtatggcggatgtgaatgggatgtttgtcgactcaagttcggcttcaagacaaaggggtt 26616845  T
Q  118 caatgttcaacagaatgcgttagctgtagttctaaccatgaagatcttgcacatattatatt 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  26616846 caatgttcaacagaatgcgttagctgtagttctaaccatgaagatcttgcaaatattatatt 26616907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 6e-41; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 117 - 381
Target Start/End: Complemental strand, 12078100 - 12077831
Alignment:
Q  117 tcaatgttcaacagaatgcgttagctgtagttctaaccatgaagatcttgcacatattatatttgattgtccttttgaagtgcaagtatggcaaatggct 216  Q
    ||||||| ||||| |||||||||| |||| ||||| ||||||||| ||| ||||||||   |||||||||| |||||  || ||||| ||| ||||||||    
T  12078100 tcaatgtccaacaaaatgcgttagttgtaattctatccatgaagacctttcacatattgcttttgattgtctttttgcggttcaagtttggaaaatggct 12078001  T
Q  217 ggactatggaatgaggtaaatcatacggttctcatcacaaattcgactatagatgctatattttccttgttgcaaaatttatcccaggaacatgttcagc 316  Q
     | || ||||||| ||||||||| | |||||| |||||||| ||| ||||| |||||||||||| |||||||||||||| |||  |||||||||||||      
T  12078000 cggctttggaatggggtaaatcacatggttcttatcacaaactcgtctatatatgctatatttttcttgttgcaaaattcatcataggaacatgttcaat 12077901  T
Q  317 g-----caactattctttggagtctaaggaagcatcgaaaccttaaactttgggagaatgaaaatgagtt 381  Q
    |     ||| |||| ||||||||||   ||||||||  |||||||||| |||| ||||||||||||||||    
T  12077900 gtacgacaattattttttggagtctctagaagcatcataaccttaaacattggaagaatgaaaatgagtt 12077831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 95 - 314
Target Start/End: Original strand, 20964055 - 20964275
Alignment:
Q  95 ttcggcttcaagacaaaggggttcaatgttcaacagaatgcgttagctgtagttctaaccatgaagatcttgcacatattatatttgattgtccttttga 194  Q
    |||| |||||||| ||||||||| ||||| |||||   || ||| | |||| ||||||||||||||| ||| ||||||||   ||||| ||||||||||     
T  20964055 ttcgtcttcaagataaaggggtttaatgtccaacaacttgtgttcgttgtaattctaaccatgaagaccttacacatattgcttttgaatgtccttttgc 20964154  T
Q  195 agtgcaagtatggcaaatggctggactatggaatgaggtaaatcatacggttctcatcacaaattcgactatagatgctatattttc-cttgttgcaaaa 293  Q
      |||| |||| | |||||| | | || ||||| ||||| |||||| ||||| | ||||| ||||||  | |||||| |||||||||  |||||||||||    
T  20964155 gttgcaggtatagaaaatggtttgtctttggaacgaggttaatcatgcggttattatcactaattcggttgtagatgttatattttcttttgttgcaaaa 20964254  T
Q  294 tttatcccaggaacatgttca 314  Q
    |||||| || |||||||||||    
T  20964255 tttatcacaagaacatgttca 20964275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 261 - 377
Target Start/End: Original strand, 9348975 - 9349096
Alignment:
Q  261 gactatagatgctatattttccttgttgcaaaatttatcccaggaacatgttcagc-----gcaactattctttggagtctaaggaagcatcgaaacctt 355  Q
    |||||||||||||||||||||||| ||| ||||||| || ||||||| |||||| |     ||||||||||||||||||||  |||| ||||  ||||||    
T  9348975 gactatagatgctatattttccttcttgtaaaatttttcacaggaacttgttcaacgtatggcaactattctttggagtcttcggaaacatcagaacctt 9349074  T
Q  356 aaactttgggagaatgaaaatg 377  Q
    ||||||||| ||| | ||||||    
T  9349075 aaactttggaagagttaaaatg 9349096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 236
Target Start/End: Complemental strand, 24409424 - 24409231
Alignment:
Q  43 aaggtgaagaatcttgtatggcggatgtgtatgggatatttgtcgactcaagttcggcttcaagacaaaggggttcaatgttcaacagaatgcgttagct 142  Q
    ||||||||||| ||| | ||||| ||||||| ||| | |||| | || |  ||| | |||||||||||||| ||  | ||| ||||  | || ||||| |    
T  24409424 aaggtgaagaaccttatttggcgaatgtgtaggggctgtttgccaacacgtgtttgtcttcaagacaaaggagtctagtgtccaacgaattgtgttagtt 24409325  T
Q  143 gtagttctaaccatgaagatcttgcacatattatatttgattgtccttttgaagtgcaagtatggcaaatggctggactatggaatgaggtaaa 236  Q
    ||| ||| || |||||||||||||| |||||||| ||| | |||||||||||  || |||| | ||||||||| ||  | |||| |||||||||    
T  24409324 gtaattcaaatcatgaagatcttgctcatattattttttagtgtccttttgagatgtaagtgtagcaaatggcaggtatttggagtgaggtaaa 24409231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 364
Target Start/End: Complemental strand, 25114048 - 25114008
Alignment:
Q  324 ttctttggagtctaaggaagcatcgaaaccttaaactttgg 364  Q
    |||||||| ||||| ||||||||||||| ||||||||||||    
T  25114048 ttctttggcgtctatggaagcatcgaaatcttaaactttgg 25114008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 275 - 381
Target Start/End: Original strand, 18552639 - 18552750
Alignment:
Q  275 tattttccttgttgcaaaatttatcccaggaacatgttcagcg-----caactattctttggagtctaaggaagcatcgaaaccttaaactttgggagaa 369  Q
    ||||||||||||||||||||||||| || |||||||| |||||     || |||||||||||||  |  |||| ||||||||||||||| ||| ||||||    
T  18552639 tattttccttgttgcaaaatttatcacatgaacatgtccagcgtatggcagctattctttggagcatgtggaaacatcgaaaccttaaaatttaggagaa 18552738  T
Q  370 tgaaaatgagtt 381  Q
    ||| ||||||||    
T  18552739 tgagaatgagtt 18552750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 263 - 314
Target Start/End: Original strand, 3441766 - 3441817
Alignment:
Q  263 ctatagatgctatattttccttgttgcaaaatttatcccaggaacatgttca 314  Q
    |||||||||| || ||||||||||||||||||||||  ||||||||||||||    
T  3441766 ctatagatgcaatcttttccttgttgcaaaatttatatcaggaacatgttca 3441817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 236
Target Start/End: Original strand, 32930566 - 32930646
Alignment:
Q  156 tgaagatcttgcacatattatatttgattgtccttttgaagtgcaagtatggcaaatggctggactatggaatgaggtaaa 236  Q
    |||||||||||| |||||||| ||  | |||||||||| | ||||||| ||||||||||||||  | |||| |||||||||    
T  32930566 tgaagatcttgctcatattattttgaagtgtccttttgtaatgcaagtgtggcaaatggctggtatttggagtgaggtaaa 32930646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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