View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18376_high_3 (Length: 533)
Name: NF18376_high_3
Description: NF18376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18376_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 472; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 10 - 513
Target Start/End: Original strand, 41031294 - 41031797
Alignment:
| Q |
10 |
ataatactggtgtgacattatttctctagcagttgcaaccatagaagtttctgctattttattacctgtatgatgtatcacatgttcaagttctatgaca |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
41031294 |
ataatactggtgtgacattatttctctagcagttgcaaccatagaagtttctgctattttattacctgtatgatgtatcacatgttctagttctatgaca |
41031393 |
T |
|
| Q |
110 |
agttttatcctgattttgtgtctcttttgttcattggtgacaaaagtggatttgaatgcattttgtatgactgattctagttaatagtgagttaaatgta |
209 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
41031394 |
agttttatcctgattttgtgtctgttttgttcattggtgacaaaagtggatttgaatgcattttgtgtgactgattctagttaatagtgagttaaatgta |
41031493 |
T |
|
| Q |
210 |
agtgatttatgtttggatgcattaattcatctaaaaattggtcgaacaataaattcaaggctaaaaatcaattgttgtttacaccatttgtatcagtttt |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41031494 |
agtgatttatgtttggatgcattaattcatctaaaaattggtcaaacaataaatttaaggctaaaaatcaattgttgtttacaccatttgtatcagtttt |
41031593 |
T |
|
| Q |
310 |
accggagaacatccaaaggcttgaattaatttatcaccggacttgttgatgaatcatgttggttgatttgatttgatttgatctgacaatgatatatcat |
409 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41031594 |
accggagaacatccaaaggcttgaatgaatttatcaccagacttgttgatgaatcatgttggttgatttgatttgatttgatctgacaatgatatatcat |
41031693 |
T |
|
| Q |
410 |
gatcgcattctaggaaaaacagttgttagttaaagtagtttcatctattgttagttagtgtttcttactttttgttactctttccatatataagcgtgtc |
509 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41031694 |
gatcgcattccaggaaaaacagttgttagttaaagtagtttcatctattgttagttagtgtttcttactttttgttactctttccatatataagcgtgtc |
41031793 |
T |
|
| Q |
510 |
atca |
513 |
Q |
| |
|
|||| |
|
|
| T |
41031794 |
atca |
41031797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 405 - 488
Target Start/End: Original strand, 41037197 - 41037282
Alignment:
| Q |
405 |
atcatgatcgcattctaggaaaaacagttgttagttaaagtagtttcatctattgttagtt--agtgtttcttactttttgttact |
488 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||||||||| || || |||||||| ||||||| | ||||||||||||| |
|
|
| T |
41037197 |
atcatgatcccattccaggaaaaacagttgttagttaaagtagtttaatatactgttagttacagtgtttgtcactttttgttact |
41037282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 78 - 154
Target Start/End: Original strand, 41036882 - 41036958
Alignment:
| Q |
78 |
tatgatgtatcacatgttcaagttctatgacaagttttatcctgattttgtgtctcttttgttcattggtgacaaaa |
154 |
Q |
| |
|
|||||| ||||||||||||| |||| |||||||||||||| ||||||||||| | |||||||| | ||||||||| |
|
|
| T |
41036882 |
tatgatatatcacatgttcatgttccttgacaagttttatcatgattttgtgtgtattttgttcttccgtgacaaaa |
41036958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 39981168 - 39981122
Alignment:
| Q |
181 |
tgattctagttaatagtgagttaaatgtaagtgatttatgtttggat |
227 |
Q |
| |
|
||||| ||||||| ||||||||||||| ||||| ||||||||||||| |
|
|
| T |
39981168 |
tgattttagttaaaagtgagttaaatggaagtggtttatgtttggat |
39981122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 282
Target Start/End: Complemental strand, 29923026 - 29922938
Alignment:
| Q |
195 |
agtgagttaaatgt-aagtgatttatgtttggatgcattaattcatctaaaaattggtcgaacaataaattcaaggctaaaaatcaatt |
282 |
Q |
| |
|
|||||||| ||||| |||| |||||||||||||| |||| |||||| |||||| || || ||||||||||| | |||||||||||| |
|
|
| T |
29923026 |
agtgagttgaatgtgaagtaatttatgtttggatacattcattcatgcaaaaatgagttaaaaaataaattcaaagataaaaatcaatt |
29922938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 256 - 284
Target Start/End: Complemental strand, 4411334 - 4411306
Alignment:
| Q |
256 |
caataaattcaaggctaaaaatcaattgt |
284 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
4411334 |
caataaattcaaggctaaaaatcaattgt |
4411306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University