View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18376_high_8 (Length: 256)
Name: NF18376_high_8
Description: NF18376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18376_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 12454391 - 12454153
Alignment:
| Q |
1 |
tcatcacatcaagaatcaaacataacatacaaattgtannnnnnncttcctgatataaacttacattacattattacaaatatatatgaaaaattcttac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12454391 |
tcatcacatcaagaatcaaacataacatacaaattgtattttt--cttcctgatataaacttacattacattattacaaatatatatgaaaaattcttac |
12454294 |
T |
|
| Q |
101 |
tcagcttcttcaacagcagcttcaattcgaagaggaacaaatccaacagcaacaccaacaagagtaagtccattcataatagctgcaatctgaaaaatct |
200 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12454293 |
tcagcttcttcaacagcagcttcaattcgaagaagaacaaatccaacagcaacaccaacaagagtaagtccattcataatagctgcaatctgaaaaatct |
12454194 |
T |
|
| Q |
201 |
cacctgcagcattgcatgttggagaacctgcacctcctctt |
241 |
Q |
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||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
12454193 |
cacctgcagcattacatgttgaagaacctgcacctcctctt |
12454153 |
T |
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