View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18376_low_4 (Length: 443)

Name: NF18376_low_4
Description: NF18376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18376_low_4
NF18376_low_4
[»] chr3 (4 HSPs)
chr3 (18-231)||(11005910-11006123)
chr3 (18-231)||(11015473-11015686)
chr3 (18-226)||(11024485-11024693)
chr3 (178-231)||(47452021-47452074)
[»] chr4 (32 HSPs)
chr4 (239-443)||(50251018-50251222)
chr4 (85-225)||(48891326-48891469)
chr4 (89-144)||(7877727-7877782)
chr4 (86-149)||(48170587-48170650)
chr4 (98-145)||(48902929-48902976)
chr4 (86-149)||(50669048-50669111)
chr4 (89-142)||(7908325-7908378)
chr4 (387-443)||(7774187-7774243)
chr4 (102-145)||(48735423-48735466)
chr4 (102-144)||(7237764-7237806)
chr4 (102-144)||(7771396-7771438)
chr4 (102-144)||(7790081-7790123)
chr4 (188-238)||(48875747-48875797)
chr4 (394-443)||(7904696-7904745)
chr4 (390-443)||(7907989-7908042)
chr4 (105-231)||(37827029-37827161)
chr4 (88-145)||(48147744-48147801)
chr4 (85-154)||(48852654-48852723)
chr4 (390-443)||(49041499-49041552)
chr4 (407-443)||(7822633-7822669)
chr4 (387-443)||(7877384-7877440)
chr4 (89-149)||(50250809-50250869)
chr4 (186-238)||(50250912-50250964)
chr4 (110-149)||(7813470-7813509)
chr4 (110-149)||(7822959-7822998)
chr4 (105-152)||(48156465-48156512)
chr4 (186-233)||(48870448-48870495)
chr4 (186-233)||(48886134-48886181)
chr4 (102-149)||(49048614-49048661)
chr4 (393-443)||(7771068-7771118)
chr4 (390-443)||(48891073-48891126)
chr4 (85-145)||(49041188-49041248)
[»] chr6 (2 HSPs)
chr6 (102-231)||(21015714-21015849)
chr6 (102-149)||(21979679-21979726)
[»] chr7 (1 HSPs)
chr7 (87-149)||(48883794-48883856)
[»] chr8 (4 HSPs)
chr8 (102-149)||(12200300-12200347)
chr8 (102-149)||(12444728-12444775)
chr8 (402-443)||(12199971-12200012)
chr8 (402-443)||(12444399-12444440)
[»] chr5 (3 HSPs)
chr5 (87-145)||(29696203-29696261)
chr5 (391-443)||(1812089-1812141)
chr5 (186-231)||(42562453-42562498)
[»] chr1 (6 HSPs)
chr1 (391-443)||(24309841-24309893)
chr1 (86-145)||(24310168-24310227)
chr1 (102-145)||(24367144-24367187)
chr1 (86-145)||(24369477-24369536)
chr1 (96-145)||(24340405-24340454)
chr1 (96-145)||(24352770-24352819)
[»] scaffold0508 (1 HSPs)
scaffold0508 (391-443)||(11926-11978)


Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 11005910 - 11006123
Alignment:
Q  18 gtattcgctctcaatgagaaaaacttcaaacgtgatgaaatattatcttcaattgggtctatacttttatcataggacactgataccaccaagtaatcat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  11005910 gtattcgctctcaatgagaaaaacttcaaacgtgatgaaatattatcttcaattgggtctacacttttatcataggacactgataccaccaagtaatcat 11006009  T
Q  118 ctcttgaatggtcatacccaaaaccatatagacaacatacatattttgcatctaaattggaaggaggaaaaggtatttgtttgagacgtccagtggatgg 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  11006010 ctcttgaatggtcatacccaaaaccatatagacaacatacatattttgcatctaaattggaaggaggaaaaggtatttgtctgagacgtccagtggatgg 11006109  T
Q  218 attccataggtaga 231  Q
    ||||||||||||||    
T  11006110 attccataggtaga 11006123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 11015473 - 11015686
Alignment:
Q  18 gtattcgctctcaatgagaaaaacttcaaacgtgatgaaatattatcttcaattgggtctatacttttatcataggacactgataccaccaagtaatcat 117  Q
    ||||| |||||||||||||||||||||||| |||| ||||||||||| || | ||||||||||||| ||| |||||||||||||||||||||||||||||    
T  11015473 gtattagctctcaatgagaaaaacttcaaatgtgaagaaatattatcgtctactgggtctatacttgtattataggacactgataccaccaagtaatcat 11015572  T
Q  118 ctcttgaatggtcatacccaaaaccatatagacaacatacatattttgcatctaaattggaaggaggaaaaggtatttgtttgagacgtccagtggatgg 217  Q
    ||||| |||||||||||||||||||||| |||||||||  |||||| |||||||||||||||| ||||||||||||||||||| || ||||||| |||||    
T  11015573 ctcttaaatggtcatacccaaaaccatacagacaacatgaatatttggcatctaaattggaagcaggaaaaggtatttgtttgtgatgtccagttgatgg 11015672  T
Q  218 attccataggtaga 231  Q
    ||||||||||||||    
T  11015673 attccataggtaga 11015686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 18 - 226
Target Start/End: Original strand, 11024485 - 11024693
Alignment:
Q  18 gtattcgctctcaatgagaaaaacttcaaacgtgatgaaatattatcttcaattgggtctatacttttatcataggacactgataccaccaagtaatcat 117  Q
    ||||| |||||||| ||||||||||||||| ||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  11024485 gtattagctctcaaagagaaaaacttcaaatgtgatgaaatattttcttcaattaggtctatactcttatcataggacactgataccaccaagtaatcat 11024584  T
Q  118 ctcttgaatggtcatacccaaaaccatatagacaacatacatattttgcatctaaattggaaggaggaaaaggtatttgtttgagacgtccagtggatgg 217  Q
    ||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||| |||||||  ||| || |||  || |||||    
T  11024585 ctcttgaatggtcatacccaaaaccatatagacaacatgaatatttggcatctaaattggaaggaggaaatggtattttcttgtgatgtctggtcgatgg 11024684  T
Q  218 attccatag 226  Q
    |||||||||    
T  11024685 attccatag 11024693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 178 - 231
Target Start/End: Original strand, 47452021 - 47452074
Alignment:
Q  178 aaggaggaaaaggtatttgtttgagacgtccagtggatggattccataggtaga 231  Q
    ||||||| ||||||||||||||| ||  |||||||||||||||||||| |||||    
T  47452021 aaggaggcaaaggtatttgtttgtgaactccagtggatggattccatatgtaga 47452074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 239 - 443
Target Start/End: Original strand, 50251018 - 50251222
Alignment:
Q  239 gaaaattatgagattggggaatcaaacaagacttagtaaggttcactaaagaagcataatagtgggacgattcaaaatctatagaataaacttcatgagg 338  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50251018 gaaaattatgagattggggaatcaaacaagacttagtaaggttcactaaagaagcataatagtgggacgattcaaaatctatagaataaacttcatgagg 50251117  T
Q  339 tgaatcttccattatggctagaattctaggaggagtttgtgcagtggaggtggtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaa 438  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50251118 tgaatcttccattatggctagaattctaggaggagtttgtgcagtggaggtggtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaa 50251217  T
Q  439 aacca 443  Q
    |||||    
T  50251218 aacca 50251222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 85 - 225
Target Start/End: Complemental strand, 48891469 - 48891326
Alignment:
Q  85 tatcataggacactgataccaccaagtaatcatctcttgaatggtcatacccaaaaccatatagacaacatacatattttgcatctaaattgga------ 178  Q
    |||||||||||||||| |||||||| |||||||||||| |    ||||||| ||||||||||||| |||||| ||| || ||||||||  | ||          
T  48891469 tatcataggacactgaaaccaccaactaatcatctcttaa---ctcatacctaaaaccatatagataacataaatagttggcatctaacctcgaatcaat 48891373  T
Q  179 aggaggaaaaggtatttgtttgagacgtccagtggatggattccata 225  Q
    |||||  ||||||||||||||| || |||||||||||||||||||||    
T  48891372 aggagacaaaggtatttgtttgtgaagtccagtggatggattccata 48891326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 89 - 144
Target Start/End: Complemental strand, 7877782 - 7877727
Alignment:
Q  89 ataggacactgataccaccaagtaatcatctcttgaatggtcatacccaaaaccat 144  Q
    |||||||| ||| ||||||||||||||||||||||| |||||||| ||||||||||    
T  7877782 ataggacaatgaaaccaccaagtaatcatctcttgattggtcataaccaaaaccat 7877727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 86 - 149
Target Start/End: Original strand, 48170587 - 48170650
Alignment:
Q  86 atcataggacactgataccaccaagtaatcatctcttgaatggtcatacccaaaaccatataga 149  Q
    |||| |||||||||| ||||| ||||||||||||||| | || |||||||||||||||||||||    
T  48170587 atcacaggacactgaaaccactaagtaatcatctcttaactgatcatacccaaaaccatataga 48170650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 98 - 145
Target Start/End: Complemental strand, 48902976 - 48902929
Alignment:
Q  98 tgataccaccaagtaatcatctcttgaatggtcatacccaaaaccata 145  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||    
T  48902976 tgataccatcaagtaatcatctcttgagtggtcatacccaaaaccata 48902929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 86 - 149
Target Start/End: Complemental strand, 50669111 - 50669048
Alignment:
Q  86 atcataggacactgataccaccaagtaatcatctcttgaatggtcatacccaaaaccatataga 149  Q
    ||||||||||| ||| || ||||||||||||||||||||  ||||||| |||||||||||||||    
T  50669111 atcataggacaatgaaacaaccaagtaatcatctcttgaccggtcataaccaaaaccatataga 50669048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 89 - 142
Target Start/End: Complemental strand, 7908378 - 7908325
Alignment:
Q  89 ataggacactgataccaccaagtaatcatctcttgaatggtcatacccaaaacc 142  Q
    |||||||| ||| ||||||||||||||||||||||| |||||||| ||||||||    
T  7908378 ataggacaatgaaaccaccaagtaatcatctcttgactggtcataaccaaaacc 7908325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 387 - 443
Target Start/End: Original strand, 7774187 - 7774243
Alignment:
Q  387 ggtggtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaacca 443  Q
    |||||| |||||||||||  |||||||| | ||||||||||||||||||||||||||    
T  7774187 ggtggtgagttgaaaatgtgaatttgcaaaatggggatcagagataagagaaaacca 7774243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 102 - 145
Target Start/End: Original strand, 48735423 - 48735466
Alignment:
Q  102 accaccaagtaatcatctcttgaatggtcatacccaaaaccata 145  Q
    |||||||||||||||||| || ||||||||||||||||||||||    
T  48735423 accaccaagtaatcatctgttaaatggtcatacccaaaaccata 48735466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 144
Target Start/End: Original strand, 7237764 - 7237806
Alignment:
Q  102 accaccaagtaatcatctcttgaatggtcatacccaaaaccat 144  Q
    ||||||||||||||||||||||| |||||||| ||||||||||    
T  7237764 accaccaagtaatcatctcttgactggtcataaccaaaaccat 7237806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 144
Target Start/End: Complemental strand, 7771438 - 7771396
Alignment:
Q  102 accaccaagtaatcatctcttgaatggtcatacccaaaaccat 144  Q
    ||||||||||||||||||||||| |||||||| ||||||||||    
T  7771438 accaccaagtaatcatctcttgactggtcataaccaaaaccat 7771396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 144
Target Start/End: Complemental strand, 7790123 - 7790081
Alignment:
Q  102 accaccaagtaatcatctcttgaatggtcatacccaaaaccat 144  Q
    ||||||||||||||||||||||| |||||||| ||||||||||    
T  7790123 accaccaagtaatcatctcttgactggtcataaccaaaaccat 7790081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 48875797 - 48875747
Alignment:
Q  188 aggtatttgtttgagacgtccagtggatggattccataggtagaggcttga 238  Q
    ||||||||||||| ||  ||| |||||||||||||||||||||||||||||    
T  48875797 aggtatttgtttgtgaaatccggtggatggattccataggtagaggcttga 48875747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 394 - 443
Target Start/End: Complemental strand, 7904745 - 7904696
Alignment:
Q  394 agttgaaaatgcaaatttgcacagtggggatcagagataagagaaaacca 443  Q
    |||||||||||  |||||||| |||| |||||||||||||||||||||||    
T  7904745 agttgaaaatgtgaatttgcaaagtgaggatcagagataagagaaaacca 7904696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 390 - 443
Target Start/End: Complemental strand, 7908042 - 7907989
Alignment:
Q  390 ggtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaacca 443  Q
    |||||||||||||||  |||||||| | |||||| |||||||||||||||||||    
T  7908042 ggtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaacca 7907989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 105 - 231
Target Start/End: Original strand, 37827029 - 37827161
Alignment:
Q  105 accaagtaatcatctcttgaatggtcatacccaaaaccatatagacaacatacatattttgcatctaaattgg------aaggaggaaaaggtatttgtt 198  Q
    ||||||||||||||||| || |||||||| ||||||||||||||| |||  | ||| | | | || |||||||      ||||||  || ||||||||||    
T  37827029 accaagtaatcatctctagactggtcataaccaaaaccatatagagaaccgaaataatattcttccaaattggagttaaaaggagacaagggtatttgtt 37827128  T
Q  199 tgagacgtccagtggatggattccataggtaga 231  Q
    || ||  |||||||||||||||||||| |||||    
T  37827129 tgtgaaatccagtggatggattccatatgtaga 37827161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 88 - 145
Target Start/End: Original strand, 48147744 - 48147801
Alignment:
Q  88 cataggacactgataccaccaagtaatcatctcttgaatggtcatacccaaaaccata 145  Q
    ||||||| | ||| |||||||||||||||||| || | ||||||||||||||||||||    
T  48147744 cataggagaatgaaaccaccaagtaatcatctgttaactggtcatacccaaaaccata 48147801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 85 - 154
Target Start/End: Complemental strand, 48852723 - 48852654
Alignment:
Q  85 tatcataggacactgataccaccaagtaatcatctcttgaatggtcatacccaaaaccatatagacaaca 154  Q
    |||||||||||| | | || ||||||||||||||  ||||  ||||||||||||||||||||||| ||||    
T  48852723 tatcataggacattaaaactaccaagtaatcatcggttgacgggtcatacccaaaaccatatagataaca 48852654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 390 - 443
Target Start/End: Original strand, 49041499 - 49041552
Alignment:
Q  390 ggtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaacca 443  Q
    |||||||| ||||||  |||||||| | ||||||||||||||||||||||||||    
T  49041499 ggtaagttaaaaatgagaatttgcaaaatggggatcagagataagagaaaacca 49041552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 407 - 443
Target Start/End: Complemental strand, 7822669 - 7822633
Alignment:
Q  407 aatttgcacagtggggatcagagataagagaaaacca 443  Q
    |||||||| ||||||||||||||||||||||||||||    
T  7822669 aatttgcaaagtggggatcagagataagagaaaacca 7822633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 443
Target Start/End: Complemental strand, 7877440 - 7877384
Alignment:
Q  387 ggtggtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaacca 443  Q
    |||||| |||||||||||  |||||||| | | ||||||||||||||||||||||||    
T  7877440 ggtggtgagttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaacca 7877384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 89 - 149
Target Start/End: Original strand, 50250809 - 50250869
Alignment:
Q  89 ataggacactgataccaccaagtaatcatctcttgaatggtcatacccaaaaccatataga 149  Q
    |||||| | ||| |||||||| ||||||||| |||| |||||||| |||||||||||||||    
T  50250809 ataggatattgaaaccaccaaataatcatctgttgagtggtcataaccaaaaccatataga 50250869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 50250912 - 50250964
Alignment:
Q  186 aaaggtatttgtttgagacgtccagtggatggattccataggtagaggcttga 238  Q
    |||||||||||| || || | || |||||||||||||||||||||||||||||    
T  50250912 aaaggtatttgtatgtgaagcccggtggatggattccataggtagaggcttga 50250964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 149
Target Start/End: Complemental strand, 7813509 - 7813470
Alignment:
Q  110 gtaatcatctcttgaatggtcatacccaaaaccatataga 149  Q
    ||||||||||||||| |||||||| |||||||||||||||    
T  7813509 gtaatcatctcttgactggtcataaccaaaaccatataga 7813470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 149
Target Start/End: Complemental strand, 7822998 - 7822959
Alignment:
Q  110 gtaatcatctcttgaatggtcatacccaaaaccatataga 149  Q
    ||||||||||||||| |||||||| |||||||||||||||    
T  7822998 gtaatcatctcttgactggtcataaccaaaaccatataga 7822959  T

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Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 152
Target Start/End: Original strand, 48156465 - 48156512
Alignment:
Q  105 accaagtaatcatctcttgaatggtcatacccaaaaccatatagacaa 152  Q
    |||||||||||||||||| | || ||||||||||| ||||||||||||    
T  48156465 accaagtaatcatctcttaattgatcatacccaaatccatatagacaa 48156512  T

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Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 233
Target Start/End: Complemental strand, 48870495 - 48870448
Alignment:
Q  186 aaaggtatttgtttgagacgtccagtggatggattccataggtagagg 233  Q
    ||||||||||||||| ||  ||| ||||||||||||||||||||||||    
T  48870495 aaaggtatttgtttgtgaaatccggtggatggattccataggtagagg 48870448  T

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Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 233
Target Start/End: Complemental strand, 48886181 - 48886134
Alignment:
Q  186 aaaggtatttgtttgagacgtccagtggatggattccataggtagagg 233  Q
    ||||||||||||||| ||  ||| ||||||||||||||||||||||||    
T  48886181 aaaggtatttgtttgtgaaatccggtggatggattccataggtagagg 48886134  T

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Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 149
Target Start/End: Original strand, 49048614 - 49048661
Alignment:
Q  102 accaccaagtaatcatctcttgaatggtcatacccaaaaccatataga 149  Q
    |||||||| ||||||||| ||||  |||||||||||||||||||||||    
T  49048614 accaccaaataatcatctgttgatgggtcatacccaaaaccatataga 49048661  T

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Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 393 - 443
Target Start/End: Complemental strand, 7771118 - 7771068
Alignment:
Q  393 aagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaacca 443  Q
    ||||||||||||  ||||| || |||| |||||||||||||||||||||||    
T  7771118 aagttgaaaatgtgaattttcaaagtgaggatcagagataagagaaaacca 7771068  T

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Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 443
Target Start/End: Complemental strand, 48891126 - 48891073
Alignment:
Q  390 ggtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaacca 443  Q
    |||||||||||||||| |||||||| | || ||||| |||| ||||||||||||    
T  48891126 ggtaagttgaaaatgcgaatttgcaaaatgaggatctgagacaagagaaaacca 48891073  T

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Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 145
Target Start/End: Original strand, 49041188 - 49041248
Alignment:
Q  85 tatcataggacactgataccaccaagtaatcatctcttgaatggtcatacccaaaaccata 145  Q
    ||||||| || ||||| |||| ||||||||||||| ||||  | |||||||||||||||||    
T  49041188 tatcatacgatactgaaaccatcaagtaatcatctgttgacggatcatacccaaaaccata 49041248  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 102 - 231
Target Start/End: Complemental strand, 21015849 - 21015714
Alignment:
Q  102 accaccaagtaatcatctcttgaatggtcatacccaaaaccatatagacaacatacatattttgcatctaaattgga------aggaggaaaaggtattt 195  Q
    |||||||| ||||||||| ||||  ||||||||||||||||||||||| |||||| ||| ||  || ||||||  ||      |||||  ||||||||||    
T  21015849 accaccaaataatcatctgttgatgggtcatacccaaaaccatatagataacatatataattgacacctaaatatgaactattaggagacaaaggtattt 21015750  T
Q  196 gtttgagacgtccagtggatggattccataggtaga 231  Q
    ||||| ||  || |||||||||||||||||||||||    
T  21015749 gtttgtgaactctagtggatggattccataggtaga 21015714  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 102 - 149
Target Start/End: Original strand, 21979679 - 21979726
Alignment:
Q  102 accaccaagtaatcatctcttgaatggtcatacccaaaaccatataga 149  Q
    |||||||||||||||| |||||| |||||||| |||||||||||||||    
T  21979679 accaccaagtaatcatttcttgactggtcataaccaaaaccatataga 21979726  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 87 - 149
Target Start/End: Complemental strand, 48883856 - 48883794
Alignment:
Q  87 tcataggacactgataccaccaagtaatcatctcttgaatggtcatacccaaaaccatataga 149  Q
    |||||||||| ||| ||||||| |||||||||||||||  ||||||| |||||||||||||||    
T  48883856 tcataggacattgaaaccaccatgtaatcatctcttgacgggtcataaccaaaaccatataga 48883794  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 102 - 149
Target Start/End: Complemental strand, 12200347 - 12200300
Alignment:
Q  102 accaccaagtaatcatctcttgaatggtcatacccaaaaccatataga 149  Q
    |||||||||||||||||||||||  ||||||| |||||||||||||||    
T  12200347 accaccaagtaatcatctcttgaccggtcataaccaaaaccatataga 12200300  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 102 - 149
Target Start/End: Complemental strand, 12444775 - 12444728
Alignment:
Q  102 accaccaagtaatcatctcttgaatggtcatacccaaaaccatataga 149  Q
    |||||||||||||||||||||||  ||||||| |||||||||||||||    
T  12444775 accaccaagtaatcatctcttgaccggtcataaccaaaaccatataga 12444728  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 443
Target Start/End: Complemental strand, 12200012 - 12199971
Alignment:
Q  402 atgcaaatttgcacagtggggatcagagataagagaaaacca 443  Q
    |||| |||||||| |||| |||||||||||||||||||||||    
T  12200012 atgcgaatttgcaaagtgaggatcagagataagagaaaacca 12199971  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 443
Target Start/End: Complemental strand, 12444440 - 12444399
Alignment:
Q  402 atgcaaatttgcacagtggggatcagagataagagaaaacca 443  Q
    |||| |||||||| |||| |||||||||||||||||||||||    
T  12444440 atgcgaatttgcaaagtgaggatcagagataagagaaaacca 12444399  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 145
Target Start/End: Complemental strand, 29696261 - 29696203
Alignment:
Q  87 tcataggacactgataccaccaagtaatcatctcttgaatggtcatacccaaaaccata 145  Q
    |||||||||| ||| | |||||||||||||||| |||| | ||||||||||||||||||    
T  29696261 tcataggacattgaaatcaccaagtaatcatctgttgactcgtcatacccaaaaccata 29696203  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 443
Target Start/End: Complemental strand, 1812141 - 1812089
Alignment:
Q  391 gtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaacca 443  Q
    ||||||||||||||  |||||||| |||||||||  |||||||||||||||||    
T  1812141 gtaagttgaaaatgataatttgcaaagtggggatttgagataagagaaaacca 1812089  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 231
Target Start/End: Original strand, 42562453 - 42562498
Alignment:
Q  186 aaaggtatttgtttgagacgtccagtggatggattccataggtaga 231  Q
    ||||||||||||||| || ||||  |||||||||||||||||||||    
T  42562453 aaaggtatttgtttgtgatgtccgatggatggattccataggtaga 42562498  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 443
Target Start/End: Complemental strand, 24309893 - 24309841
Alignment:
Q  391 gtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaacca 443  Q
    ||||||||||||||  |||||||| |||| | |||||||||||||||||||||    
T  24309893 gtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaacca 24309841  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 145
Target Start/End: Complemental strand, 24310227 - 24310168
Alignment:
Q  86 atcataggacactgataccaccaagtaatcatctcttgaatggtcatacccaaaaccata 145  Q
    ||||||||| ||| | || |||||||||||||||||||| | |||||| |||||||||||    
T  24310227 atcataggatactaaaactaccaagtaatcatctcttgactcgtcataaccaaaaccata 24310168  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 145
Target Start/End: Complemental strand, 24367187 - 24367144
Alignment:
Q  102 accaccaagtaatcatctcttgaatggtcatacccaaaaccata 145  Q
    |||||||||||||||||| |||| | ||||||||||||||||||    
T  24367187 accaccaagtaatcatctgttgacttgtcatacccaaaaccata 24367144  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 145
Target Start/End: Complemental strand, 24369536 - 24369477
Alignment:
Q  86 atcataggacactgataccaccaagtaatcatctcttgaatggtcatacccaaaaccata 145  Q
    ||||||||| ||||| ||||||| |||||||||| |||| | |||||| |||||||||||    
T  24369536 atcataggatactgaaaccaccaggtaatcatctgttgactcgtcatagccaaaaccata 24369477  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 24340454 - 24340405
Alignment:
Q  96 actgataccaccaagtaatcatctcttgaatggtcatacccaaaaccata 145  Q
    ||||| |||||||||||||||| | |||| | ||||||||||||||||||    
T  24340454 actgaaaccaccaagtaatcatatgttgattcgtcatacccaaaaccata 24340405  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 24352819 - 24352770
Alignment:
Q  96 actgataccaccaagtaatcatctcttgaatggtcatacccaaaaccata 145  Q
    ||||| |||||||||||||||| | |||| | ||||||||||||||||||    
T  24352819 actgaaaccaccaagtaatcatatgttgattcgtcatacccaaaaccata 24352770  T

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Target: scaffold0508 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 391 - 443
Target Start/End: Complemental strand, 11978 - 11926
Alignment:
Q  391 gtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaacca 443  Q
    ||||||||||||||  |||||||| ||||   |||||||||||||||||||||    
T  11978 gtaagttgaaaatgtgaatttgcaaagtgattatcagagataagagaaaacca 11926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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