View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18376_low_5 (Length: 333)
Name: NF18376_low_5
Description: NF18376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18376_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 14527209 - 14526884
Alignment:
| Q |
1 |
tcctgtatactcactnnnnnnnctatagttcgcagaccttgtgaagcaaccatcaaggtaaatgtgaccggagttataagggaagcactgaggaagaacc |
100 |
Q |
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| T |
14527209 |
tcctgtatactcactaaaaaaactatagttcacagacctcatgaagcaaccatcaaggtaaatgcgaccggagttataagggaagcactgaggaagaacc |
14527110 |
T |
|
| Q |
101 |
gtgcgcgcctcagcataacacaacacacagtcaagtaatgaaagatctccatagcattgtgctaggccatagttatcatcaggtcctgtccctgtaactg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14527109 |
gtgcgcgcctcagcataacacaacacacagtcaagtaatgaaagatatccatagcattgtgctaggccatagttatcatcaggtcctgtccctgtaactg |
14527010 |
T |
|
| Q |
201 |
ctgtgccgaagccggtactgcgcatctgctcgctaatcttctccatagtcgcaacaaaattcggaacaaagatgcttgtgttatgctctacttgatggcc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14527009 |
ctgtgccgaagccggtactgcgcatctgctcgctaatcttctccatagttgcaacaaaattcggaacaaagatgcttgtgttatgctctacttgatggcc |
14526910 |
T |
|
| Q |
301 |
acatgttatcataactgtctctgctc |
326 |
Q |
| |
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|||||||||||||||||||| ||||| |
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| T |
14526909 |
acatgttatcataactgtctttgctc |
14526884 |
T |
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