View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18376_low_7 (Length: 257)

Name: NF18376_low_7
Description: NF18376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18376_low_7
NF18376_low_7
[»] chr3 (4 HSPs)
chr3 (1-241)||(11006245-11006485)
chr3 (5-251)||(11015812-11016058)
chr3 (1-250)||(11024820-11025069)
chr3 (86-218)||(47452275-47452407)
[»] chr8 (6 HSPs)
chr8 (2-212)||(4032200-4032410)
chr8 (86-206)||(12199897-12200017)
chr8 (86-206)||(12444325-12444445)
chr8 (98-205)||(12194892-12194999)
chr8 (98-205)||(12439320-12439427)
chr8 (88-181)||(15348477-15348570)
[»] chr4 (32 HSPs)
chr4 (3-218)||(7770982-7771197)
chr4 (98-218)||(7822547-7822667)
chr4 (88-218)||(7904610-7904740)
chr4 (98-215)||(7813061-7813178)
chr4 (3-217)||(7774114-7774328)
chr4 (98-215)||(7800218-7800335)
chr4 (3-218)||(7789667-7789882)
chr4 (89-218)||(7238091-7238220)
chr4 (88-212)||(45372427-45372551)
chr4 (3-217)||(7877299-7877513)
chr4 (88-217)||(7907904-7908033)
chr4 (88-214)||(48862823-48862952)
chr4 (86-217)||(49044597-49044728)
chr4 (88-216)||(48170956-48171087)
chr4 (100-217)||(48902529-48902646)
chr4 (88-219)||(33134193-33134327)
chr4 (88-216)||(48156797-48156925)
chr4 (88-185)||(48891020-48891117)
chr4 (88-219)||(37827364-37827495)
chr4 (89-215)||(7765202-7765328)
chr4 (88-218)||(49041508-49041638)
chr4 (88-218)||(50251178-50251308)
chr4 (79-215)||(45366579-45366718)
chr4 (116-182)||(48735713-48735779)
chr4 (111-217)||(50668622-50668728)
chr4 (86-214)||(48148050-48148181)
chr4 (115-180)||(49048996-49049061)
chr4 (115-215)||(48898303-48898403)
chr4 (89-185)||(7786054-7786150)
chr4 (58-218)||(47207512-47207672)
chr4 (88-215)||(48870123-48870250)
chr4 (88-215)||(48885809-48885936)
[»] chr6 (2 HSPs)
chr6 (86-217)||(21015355-21015486)
chr6 (64-218)||(21979990-21980144)
[»] chr5 (5 HSPs)
chr5 (50-198)||(29695750-29695898)
chr5 (88-205)||(29687642-29687759)
chr5 (98-215)||(1812006-1812123)
chr5 (115-174)||(29712866-29712925)
chr5 (116-168)||(178647-178699)
[»] chr1 (5 HSPs)
chr1 (88-216)||(24309757-24309885)
chr1 (98-216)||(24339994-24340112)
chr1 (98-180)||(24322078-24322160)
chr1 (119-216)||(24415417-24415514)
chr1 (98-156)||(24366795-24366853)
[»] scaffold0508 (1 HSPs)
scaffold0508 (47-216)||(11842-12011)
[»] chr7 (1 HSPs)
chr7 (149-217)||(48883361-48883429)


Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 11006245 - 11006485
Alignment:
Q  1 cgatgcttcaaaatctatggatcgaatttcaagagctggagttgacaagaacacaattctattagtgtgtgttgtagtggaaaggtcaaaatgcgatttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11006245 cgatgcttcaaaatctatggatcgaatttcaagagctggagttgacatgaacacaattctattagtgtgtgttctagtggaaaggtcaaaatgcgatttt 11006344  T
Q  101 gcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaagatttgtatgatca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11006345 gcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaagatttgtatgatca 11006444  T
Q  201 attcatgaggcagatacaggccggtcttcatctccatctgt 241  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  11006445 attcatgaggcagatacaggccggtcttcgtctccatctgt 11006485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 5 - 251
Target Start/End: Original strand, 11015812 - 11016058
Alignment:
Q  5 gcttcaaaatctatggatcgaatttcaagagctggagttgacaagaacacaattctattagtgtgtgttgtagtggaaaggtcaaaatgcgattttgcaa 104  Q
    ||||||||||| ||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  11015812 gcttcaaaatcaatggatcgagtttcaagagctagagttgacatgaacacaattctattagtgtgtgttgcagtggaaagttcaaaatgcgattttgcaa 11015911  T
Q  105 agtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaagatttgtatgatcaattc 204  Q
    ||| | ||||||||||||||| |||| ||||||||||||| || ||||||||||| || ||||||||||| |||||||||| ||||||||| ||||||||    
T  11015912 agttatgatcagagataagagctaacaatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaacctcaacatgatttgtattatcaattc 11016011  T
Q  205 atgaggcagatacaggccggtcttcatctccatctgtgatcctcctc 251  Q
    ||||||||||||||||||||||||| |||||||||||  ||||||||    
T  11016012 atgaggcagatacaggccggtcttcttctccatctgtcttcctcctc 11016058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 11024820 - 11025069
Alignment:
Q  1 cgatgcttcaaaatctatggatcgaatttcaagagctggagttgacaagaacacaattctattagtgtgtgttgtagtggaaaggtcaaaatgcgatttt 100  Q
    ||||||||||||||||||||||||| |||| |||||| ||||||||| |||||||||||||||||||||||||| || |||||| |||||||||||||||    
T  11024820 cgatgcttcaaaatctatggatcgagtttccagagctagagttgacatgaacacaattctattagtgtgtgttgcaggggaaagttcaaaatgcgatttt 11024919  T
Q  101 gcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaagatttgtatgatca 200  Q
    ||||||| | ||||||||||||||| |||||||||||||||||| || ||||||||||| || ||||||||||| |||||||||| ||||||||||||||    
T  11024920 gcaaagttatgatcagagataagagctaaccatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaacctcaacatgatttgtatgatca 11025019  T
Q  201 attcatgaggcagatacaggccggtcttcatctccatctgtgatcctcct 250  Q
    |||||||||||| ||||||| |||||||| |||||||||||  |||||||    
T  11025020 attcatgaggcaaatacaggtcggtcttcttctccatctgtcttcctcct 11025069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 86 - 218
Target Start/End: Original strand, 47452275 - 47452407
Alignment:
Q  86 tcaaaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaaca 185  Q
    |||||||| | |||||||||| ||||||||||||||||||  |||||||||||| |||  |||||||| |||| ||| ||||||||||||||||||| ||    
T  47452275 tcaaaatgtgtttttgcaaagagaggatcagagataagagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcacca 47452374  T
Q  186 agatttgtatgatcaattcatgaggcagataca 218  Q
    |||| || || ||||||||| |||| |||||||    
T  47452375 agatctggattatcaattcaagaggtagataca 47452407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 2 - 212
Target Start/End: Original strand, 4032200 - 4032410
Alignment:
Q  2 gatgcttcaaaatctatggatcgaatttcaagagctggagttgacaagaacacaattctattagtgtgtgttgtagtggaaaggtcaaaatgcgattttg 101  Q
    |||| ||| |||||||| |||||| ||| ||||  ||||||||| | || ||||| ||||| | |||||||| ||| || ||  | ||||||||| ||||    
T  4032200 gatgtttcgaaatctatagatcgagttttaagatttggagttgatatgatcacaagtctatgaatgtgtgttttagaggtaatttgaaaatgcgaatttg 4032299  T
Q  102 caaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaagatttgtatgatcaa 201  Q
    |||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||| |||||||  || |  ||||  |||||||| ||||||||    
T  4032300 caaagtgaggatcagatataagagttaaccaagatttacaaacacacttgaaacgtataagagacttcattggtagtctcagtaagatttggatgatcaa 4032399  T
Q  202 ttcatgaggca 212  Q
    |||||||||||    
T  4032400 ttcatgaggca 4032410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 86 - 206
Target Start/End: Complemental strand, 12200017 - 12199897
Alignment:
Q  86 tcaaaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaaca 185  Q
    |||| |||||| ||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||| || ||| ||||||||||||||||||| ||    
T  12200017 tcaacatgcgaatttgcaaagtgaggatcagagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagca 12199918  T
Q  186 agatttgtatgatcaattcat 206  Q
     |||||| ||||| |||||||    
T  12199917 ggatttgaatgattaattcat 12199897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 86 - 206
Target Start/End: Complemental strand, 12444445 - 12444325
Alignment:
Q  86 tcaaaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaaca 185  Q
    |||| |||||| ||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||| || ||| ||||||||||||||||||| ||    
T  12444445 tcaacatgcgaatttgcaaagtgaggatcagagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagca 12444346  T
Q  186 agatttgtatgatcaattcat 206  Q
     |||||| ||||| |||||||    
T  12444345 ggatttgaatgattaattcat 12444325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 98 - 205
Target Start/End: Complemental strand, 12194999 - 12194892
Alignment:
Q  98 tttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaagatttgtatga 197  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||  || ||||||| || ||| ||||||||||||||||||| || |||||| ||||    
T  12194999 tttgcaaagtgtggatcagagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatga 12194900  T
Q  198 tcaattca 205  Q
    | ||||||    
T  12194899 ttaattca 12194892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 98 - 205
Target Start/End: Complemental strand, 12439427 - 12439320
Alignment:
Q  98 tttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaagatttgtatga 197  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||  || ||||||| || ||| ||||||||||||||||||| || |||||| ||||    
T  12439427 tttgcaaagtgtggatcagagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatga 12439328  T
Q  198 tcaattca 205  Q
    | ||||||    
T  12439327 ttaattca 12439320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 88 - 181
Target Start/End: Complemental strand, 15348570 - 15348477
Alignment:
Q  88 aaaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctc 181  Q
    |||||| || ||||| |||| |||||||||||||||||  ||||| ||||||||||| || |||||||||||||| ||||||||||| ||||||    
T  15348570 aaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagacttcaccggtaacctc 15348477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 3 - 218
Target Start/End: Complemental strand, 7771197 - 7770982
Alignment:
Q  3 atgcttcaaaatctatggatcgaatttcaagagctggagttgacaagaacacaattctattagtgtgtgttgtagtggaaaggtcaaaatgcgattttgc 102  Q
    |||||||||||||||| |||||||||||| ||| | ||||||| | | | | || ||||  ||||||||||| || || ||| | |||||| || ||| |    
T  7771197 atgcttcaaaatctatagatcgaatttcatgagattgagttgatatgcataaaaatctacaagtgtgtgttgcagaggcaagttgaaaatgtgaattttc 7771098  T
Q  103 aaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaagatttgtatgatcaat 202  Q
    |||||||||||||||||||||||  ||||| ||||||||||| || ||||||| |||||| ||||||||||||||||||| ||  ||||| || || | |    
T  7771097 aaagtgaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacatataagagacttcaccggcaacctcatcagaatttggattattagt 7770998  T
Q  203 tcatgaggcagataca 218  Q
    ||||||||||||||||    
T  7770997 tcatgaggcagataca 7770982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 98 - 218
Target Start/End: Complemental strand, 7822667 - 7822547
Alignment:
Q  98 tttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaagatttgtatga 197  Q
    ||||||||||| ||||||||||||||||  |||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||| | || |    
T  7822667 tttgcaaagtggggatcagagataagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccggcaacctcaacaagattaggatta 7822568  T
Q  198 tcaattcatgaggcagataca 218  Q
    |||| | ||||||||||||||    
T  7822567 tcaaatgatgaggcagataca 7822547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 88 - 218
Target Start/End: Complemental strand, 7904740 - 7904610
Alignment:
Q  88 aaaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaag 187  Q
    |||||| || ||||||||||||||||||||||||||||  |||||| ||||||||||||| |||||||||||||| |||||||| ||||||| || ||||    
T  7904740 aaaatgtgaatttgcaaagtgaggatcagagataagagaaaaccataacttacaaacacatttgaaacgtataagagacttcacaggcaaccacatcaag 7904641  T
Q  188 atttgtatgatcaattcatgaggcagataca 218  Q
    ||||| || ||||||||| |||| |||||||    
T  7904640 atttgaataatcaattcacgaggaagataca 7904610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 98 - 215
Target Start/End: Complemental strand, 7813178 - 7813061
Alignment:
Q  98 tttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaagatttgtatga 197  Q
    ||||||||||| || |||||||||||||  |||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||| | || |    
T  7813178 tttgcaaagtggggttcagagataagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccggcaacctcaacaagattaggatta 7813079  T
Q  198 tcaattcatgaggcagat 215  Q
    |||| |||||||||||||    
T  7813078 tcaaatcatgaggcagat 7813061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 3 - 217
Target Start/End: Original strand, 7774114 - 7774328
Alignment:
Q  3 atgcttcaaaatctatggatcgaatttcaagagctggagttgacaagaacacaattctattagtgtgtgttgtagtggaaaggtcaaaatgcgattttgc 102  Q
    ||||||||||| |||| |||||||||||| ||| | ||| ||| | | ||| |||||||  |||||| ||||| ||||  || | |||||| || |||||    
T  7774114 atgcttcaaaacctatagatcgaatttcatgagatagagatgatatgcacataattctaggagtgtgcgttgtggtggtgagttgaaaatgtgaatttgc 7774213  T
Q  103 aaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaagatttgtatgatcaat 202  Q
    ||| || ||||||||||||||||  ||||||  |||||||||||| |||||| | ||||| ||||||||||||| || || ||||||||| || ||||||    
T  7774214 aaaatggggatcagagataagagaaaaccatagcttacaaacacatttgaaatgaataagagacttcaccggcagccgcatcaagatttgaataatcaat 7774313  T
Q  203 tcatgaggcagatac 217  Q
    |||||||| ||||||    
T  7774314 tcatgaggaagatac 7774328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 98 - 215
Target Start/End: Complemental strand, 7800335 - 7800218
Alignment:
Q  98 tttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaagatttgtatga 197  Q
    ||||||||| | |||||||||| |||||  |||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||| | || |    
T  7800335 tttgcaaagcggggatcagagacaagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccggcaacctcaacaagattaggatta 7800236  T
Q  198 tcaattcatgaggcagat 215  Q
    |||| |||||||||||||    
T  7800235 tcaaatcatgaggcagat 7800218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 3 - 218
Target Start/End: Complemental strand, 7789882 - 7789667
Alignment:
Q  3 atgcttcaaaatctatggatcgaatttcaagagctggagttgacaagaacacaattctattagtgtgtgttgtagtggaaaggtcaaaatgcgattttgc 102  Q
    |||||||||||||||| |||| ||||||| ||| | ||||||| |   | | || ||||  |||||||||||  | || ||| | |||||| || ||| |    
T  7789882 atgcttcaaaatctatagatcaaatttcatgagattgagttgatatacataaaaatctacaagtgtgtgttgcggaggcaagttgaaaatgtgaattttc 7789783  T
Q  103 aaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaagatttgtatgatcaat 202  Q
    |||||||||||| ||||||| ||  ||||| ||||||||||| || ||||||| |||||| ||||||||||||||||||| ||  ||||| || |||| |    
T  7789782 aaagtgaggatcggagataaaagaaaaccaagacttacaaacgcatttgaaacatataagagacttcaccggcaacctcatcagaatttggattatcagt 7789683  T
Q  203 tcatgaggcagataca 218  Q
    ||||||||||||||||    
T  7789682 tcatgaggcagataca 7789667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 89 - 218
Target Start/End: Original strand, 7238091 - 7238220
Alignment:
Q  89 aaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaaga 188  Q
    ||||| || |||||||||||||| |||||||||||||  ||||| |||||||||||||| |||||||  ||||| |||||||| |||||||||| ||  |    
T  7238091 aaatgtgaatttgcaaagtgagggtcagagataagagaaaaccaagacttacaaacacatttgaaacagataagagacttcactggcaacctcatcagaa 7238190  T
Q  189 tttgtatgatcaattcatgaggcagataca 218  Q
    |||| ||||| | |||||||||||||||||    
T  7238191 tttggatgattagttcatgaggcagataca 7238220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 88 - 212
Target Start/End: Original strand, 45372427 - 45372551
Alignment:
Q  88 aaaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaag 187  Q
    |||||| || |||||||| |||||||||||||||| ||  ||||| |||||||||||||| |||||||||||||| ||||||||||||||||| |  |      
T  45372427 aaaatgtgaatttgcaaaatgaggatcagagataatagaaaaccaagacttacaaacacatttgaaacgtataagagacttcaccggcaaccttagtaga 45372526  T
Q  188 atttgtatgatcaattcatgaggca 212  Q
    ||||| || ||||||||||||||||    
T  45372527 atttgaatcatcaattcatgaggca 45372551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 217
Target Start/End: Complemental strand, 7877513 - 7877299
Alignment:
Q  3 atgcttcaaaatctatggatcgaatttcaagagctggagttgacaagaacacaattctattagtgtgtgttgtagtggaaaggtcaaaatgcgattttgc 102  Q
    ||||||||||| |||| |||||||||||| ||| | ||| ||| | | ||| |||||||  |||||| ||||| ||||  || | |||||| || |||||    
T  7877513 atgcttcaaaacctattgatcgaatttcatgagatagaggtgatatgcacataattctaggagtgtgcgttgtggtggtgagttgaaaatgtgaatttgc 7877414  T
Q  103 aaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaagatttgtatgatcaat 202  Q
    ||| |  ||||||||||||||||  ||||||  ||||||||  || |||||||||||||| ||||||||| ||||||  | || |||||| || ||||||    
T  7877413 aaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccagcaaccaaatcaggatttggataatcaat 7877314  T
Q  203 tcatgaggcagatac 217  Q
    |||||||| ||||||    
T  7877313 tcatgaggaagatac 7877299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 88 - 217
Target Start/End: Complemental strand, 7908033 - 7907904
Alignment:
Q  88 aaaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaag 187  Q
    |||||| || |||||||| || ||| ||||||||||||  ||||||||||||| |||| ||||||||||| |||| |||||||||||||||||||  | |    
T  7908033 aaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacgaacagacttgaaacgtgtaagagacttcaccggcaacctcagtagg 7907934  T
Q  188 atttgtatgatcaattcatgaggcagatac 217  Q
    || || |  |||||||||||||| ||||||    
T  7907933 atctggaaaatcaattcatgaggaagatac 7907904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 88 - 214
Target Start/End: Complemental strand, 48862952 - 48862823
Alignment:
Q  88 aaaatgcgattttgcaaagtgaggatca---gagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaac 184  Q
    |||||| || ||||||||||||||||||   ||||||||||  ||||| ||||| ||||| || |||||||| ||||| ||||||||||| ||||| | |    
T  48862952 aaaatgtgaatttgcaaagtgaggatcatgagagataagagaaaaccaagacttgcaaacgcatttgaaacgaataagagacttcaccggtaaccttagc 48862853  T
Q  185 aagatttgtatgatcaattcatgaggcaga 214  Q
    | |||| | |||||||||||||||||||||    
T  48862852 aggattaggatgatcaattcatgaggcaga 48862823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 86 - 217
Target Start/End: Original strand, 49044597 - 49044728
Alignment:
Q  86 tcaaaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaaca 185  Q
    |||||||| || ||||||||||| |  | |||||||||||  |||||| |||||||||||||||||||||||| ||| ||| |||| |||||||||| ||    
T  49044597 tcaaaatgtgaatttgcaaagtgggtttgagagataagagaaaaccataacttacaaacacacttgaaacgtaaaagagacatcactggcaacctcagca 49044696  T
Q  186 agatttgtatgatcaattcatgaggcagatac 217  Q
      ||  | |||||||| |||||||||||||||    
T  49044697 gaataaggatgatcaagtcatgaggcagatac 49044728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 88 - 216
Target Start/End: Original strand, 48170956 - 48171087
Alignment:
Q  88 aaaatgcgattttgcaaagtgaggatca---gagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaac 184  Q
    ||||||||| ||||||||||||||||||   ||||||||||  ||||| |||||||||||||| |||||||||| ||| ||||||||||  ||||||| |    
T  48170956 aaaatgcgaatttgcaaagtgaggatcatgagagataagagcaaaccaagacttacaaacacatttgaaacgtagaagagacttcaccgataacctcagc 48171055  T
Q  185 aagatttgtatgatcaattcatgaggcagata 216  Q
    |  ||||| |  ||||||||| ||| ||||||    
T  48171056 agaatttgaactatcaattcaagagccagata 48171087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 100 - 217
Target Start/End: Complemental strand, 48902646 - 48902529
Alignment:
Q  100 tgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaagatttgtatgatc 199  Q
    |||||||||  ||||||| |||||||  ||||| |||||||||||||| |||||||| || || ||||| |||||||||| |  ||| ||||| ||||||    
T  48902646 tgcaaagtgctgatcagatataagagaaaaccaagacttacaaacacatttgaaacgaatgagagactttaccggcaaccactgcaaaatttggatgatc 48902547  T
Q  200 aattcatgaggcagatac 217  Q
    ||||||||||| ||||||    
T  48902546 aattcatgaggtagatac 48902529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 88 - 219
Target Start/End: Original strand, 33134193 - 33134327
Alignment:
Q  88 aaaatgcgattttgcaaagtgaggatca---gagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaac 184  Q
    |||||| || ||||||||||||||||||   ||||||||||  || || | ||||||||| || |||||||| ||||| ||||||||||| || ||||||    
T  33134193 aaaatgtgaatttgcaaagtgaggatcattagagataagagaaaatcaaggcttacaaacgcatttgaaacgaataagagacttcaccggtaatctcaac 33134292  T
Q  185 aagatttgtatgatcaattcatgaggcagatacag 219  Q
    |  ||  | ||||||||||||||||||||||||||    
T  33134293 agaataaggatgatcaattcatgaggcagatacag 33134327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 88 - 216
Target Start/End: Original strand, 48156797 - 48156925
Alignment:
Q  88 aaaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaag 187  Q
    |||||| || |||||||| |||| ||| ||||||||||  ||||| ||||||||||| ||||||||||||| ||| ||||||||||| ||||  || | |    
T  48156797 aaaatgagaatttgcaaaatgagtatcggagataagagaaaaccaagacttacaaacgcacttgaaacgtagaagagacttcaccggtaaccataaaagg 48156896  T
Q  188 atttgtatgatcaattcatgaggcagata 216  Q
    ||||| || ||||||||| | ||||||||    
T  48156897 atttgaattatcaattcaagtggcagata 48156925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 88 - 185
Target Start/End: Complemental strand, 48891117 - 48891020
Alignment:
Q  88 aaaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaaca 185  Q
    ||||||||| |||||||| |||||||| |||| |||||  ||||| ||||||||||| || |||||||||||||| ||||| ||||  ||||||||||    
T  48891117 aaaatgcgaatttgcaaaatgaggatctgagacaagagaaaaccaagacttacaaacgcatttgaaacgtataagagactttaccgataacctcaaca 48891020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 88 - 219
Target Start/End: Original strand, 37827364 - 37827495
Alignment:
Q  88 aaaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaag 187  Q
    |||||| || ||||||||||  |||| ||| |||||||||||||||||||||||||| ||  | |||| |||||| |||||||| | ||||||||  |||    
T  37827364 aaaatgtgaatttgcaaagtcgggattagatataagagttaaccatgacttacaaacgcatgtaaaacttataagagacttcactgacaacctcagtaag 37827463  T
Q  188 atttgtatgatcaattcatgaggcagatacag 219  Q
    ||||  |||||||| |  ||||| ||||||||    
T  37827464 atttcgatgatcaagttgtgaggtagatacag 37827495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 89 - 215
Target Start/End: Complemental strand, 7765328 - 7765202
Alignment:
Q  89 aaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaaga 188  Q
    ||||| || ||||||||||||||||||||||||| ||  |||||| |||||||||  |||||||||  ||  || ||||||||||| ||||||||||  |    
T  7765328 aaatgtgaatttgcaaagtgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaacctcaacagaa 7765229  T
Q  189 tttgtatgatcaattcatgaggcagat 215  Q
     ||| ||||||| ||| ||||| ||||    
T  7765228 attgaatgatcagttcttgaggaagat 7765202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 88 - 218
Target Start/End: Original strand, 49041508 - 49041638
Alignment:
Q  88 aaaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaag 187  Q
    |||||| || |||||||| || ||||||||||||||||  ||||| ||||| ||||| || |||||||  ||||| |||||||| ||||| ||||  |      
T  49041508 aaaatgagaatttgcaaaatggggatcagagataagagaaaaccaagacttgcaaacgcatttgaaacaaataagagacttcactggcaatctcattaga 49041607  T
Q  188 atttgtatgatcaattcatgaggcagataca 218  Q
    ||| | |||||||||||||||| ||||||||    
T  49041608 attaggatgatcaattcatgagacagataca 49041638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 88 - 218
Target Start/End: Original strand, 50251178 - 50251308
Alignment:
Q  88 aaaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaag 187  Q
    ||||||| | |||||| |||| ||||||||||||||||  ||||| |||||| |||| ||||| ||  ||||||| | |||||| |||||||| |  ||     
T  50251178 aaaatgcaaatttgcacagtggggatcagagataagagaaaaccaagacttagaaacccactttaattgtataagagccttcactggcaacctaactaaa 50251277  T
Q  188 atttgtatgatcaattcatgaggcagataca 218  Q
    |||||  |||||||||| |||||||||||||    
T  50251278 atttgagtgatcaattcgtgaggcagataca 50251308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 79 - 215
Target Start/End: Original strand, 45366579 - 45366718
Alignment:
Q  79 ggaaaggtcaaaatgcgattttgcaaagtgaggatca---gagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggc 175  Q
    |||||| | |||||| || ||||||||||| | ||||   ||||||||||  |||||  |||||||||| ||||||||||||||||| |||||||| ||     
T  45366579 ggaaagttgaaaatgtgaatttgcaaagtgtgaatcacgagagataagagaaaaccaatacttacaaacgcacttgaaacgtataagagacttcactggt 45366678  T
Q  176 aacctcaacaagatttgtatgatcaattcatgaggcagat 215  Q
    ||||| |  | |||||| || |||||||||||||| ||||    
T  45366679 aaccttagtaggatttggatcatcaattcatgaggaagat 45366718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 182
Target Start/End: Original strand, 48735713 - 48735779
Alignment:
Q  116 gagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctca 182  Q
    ||||||||||  ||||| |||||||||||||| |||||||| ||||| ||||||||||| |||||||    
T  48735713 gagataagagaaaaccaagacttacaaacacatttgaaacgaataagagacttcaccggtaacctca 48735779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 111 - 217
Target Start/End: Complemental strand, 50668728 - 50668622
Alignment:
Q  111 gatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaagatttgtatgatcaattcatgagg 210  Q
    |||| ||||| ||||  ||||| || |||||||| |||||||||||||||||  | ||||| |||||||||| ||| ||||| ||||||||||| | | |    
T  50668728 gatcggagatgagagaaaaccaagatttacaaacgcacttgaaacgtataagatatttcacgggcaacctcaccaaaatttgaatgatcaattcgtaatg 50668629  T
Q  211 cagatac 217  Q
    |||||||    
T  50668628 cagatac 50668622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 86 - 214
Target Start/End: Original strand, 48148050 - 48148181
Alignment:
Q  86 tcaaaatgcgattttgcaaagtgaggatca---gagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctca 182  Q
    |||||||| || ||||| ||||||||||||   ||||||||||  ||||| |||||||| ||||| |||||||| ||||| |||||||| || |||||      
T  48148050 tcaaaatgtgaatttgcgaagtgaggatcatgagagataagagaaaaccaagacttacagacacatttgaaacgaataagagacttcactggtaaccttg 48148149  T
Q  183 acaagatttgtatgatcaattcatgaggcaga 214  Q
    | | |||||| |  |||||||||| |||||||    
T  48148150 aaaggatttgaactatcaattcatcaggcaga 48148181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 180
Target Start/End: Original strand, 49048996 - 49049061
Alignment:
Q  115 agagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacct 180  Q
    |||||||||||  |||||| |||||||||||||||||||||||| ||| ||| ||||| |||||||    
T  49048996 agagataagagaaaaccataacttacaaacacacttgaaacgtaaaagagacatcaccagcaacct 49049061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 115 - 215
Target Start/End: Complemental strand, 48898403 - 48898303
Alignment:
Q  115 agagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaagatttgtatgatcaattcatgaggcaga 214  Q
    ||||||||| |  ||||| |||||||||||||||||||||||| |||| |||||||| || |  |||| ||  ||||| |||| |||||||||||| |||    
T  48898403 agagataagtgagaaccaagacttacaaacacacttgaaacgtgtaagagacttcacaggtagactcagcagaatttgaatgaccaattcatgaggaaga 48898304  T
Q  215 t 215  Q
    |    
T  48898303 t 48898303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 185
Target Start/End: Complemental strand, 7786150 - 7786054
Alignment:
Q  89 aaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaaca 185  Q
    ||||| || |||||||| |||||||||||||||| ||  | ||||  ||||||||| || |||||   |||||| || |||||||||||||||||||    
T  7786150 aaatgtgaatttgcaaattgaggatcagagataatagaaatccatagcttacaaacgcatttgaacaatataagagatttcaccggcaacctcaaca 7786054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 218
Target Start/End: Complemental strand, 47207672 - 47207512
Alignment:
Q  58 tctattagtgtgtgttgtagtggaaaggtcaaaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgt 157  Q
    ||||| |||||||||| | |||| ||| |||||||| || || | ||| || || || ||||| ||||  || || ||||| ||||||| ||| ||||||    
T  47207672 tctatgagtgtgtgttttggtggtaagttcaaaatgtgaattagaaaaatgtgggtcggagatgagagaaaatcaagacttccaaacactcttaaaacgt 47207573  T
Q  158 ataagtgacttcaccggcaacctcaacaagatttgtatgatcaattcatgaggcagataca 218  Q
    ||||| ||||||||||| |||   || | ||||   ||||||||||||||||| |||||||    
T  47207572 ataagagacttcaccggtaactataataggattaagatgatcaattcatgaggaagataca 47207512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 215
Target Start/End: Complemental strand, 48870250 - 48870123
Alignment:
Q  88 aaaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaag 187  Q
    |||||| || ||||||||  | ||||| |||||||||   ||||| ||||||||||| || |||||||| ||||| || |||||||| | ||||| ||      
T  48870250 aaaatgtgaatttgcaaaaaggggatcggagataagaaaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtagcctcagcaga 48870151  T
Q  188 atttgtatgatcaattcatgaggcagat 215  Q
    ||||| |  |||||||||||| ||||||    
T  48870150 atttgaactatcaattcatgatgcagat 48870123  T

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Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 215
Target Start/End: Complemental strand, 48885936 - 48885809
Alignment:
Q  88 aaaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaag 187  Q
    |||||| || ||||||||  | ||||| |||||||||   ||||| ||||||||||| || |||||||| ||||| || |||||||| | ||||| ||      
T  48885936 aaaatgtgaatttgcaaaaaggggatcggagataagaaaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtagcctcagcaga 48885837  T
Q  188 atttgtatgatcaattcatgaggcagat 215  Q
    ||||| |  |||||||||||| ||||||    
T  48885836 atttgaactatcaattcatgatgcagat 48885809  T

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Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 86 - 217
Target Start/End: Complemental strand, 21015486 - 21015355
Alignment:
Q  86 tcaaaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaaca 185  Q
    |||||||| ||  |||||||||| |  | |||||||||||  ||| || |||||||||||||||||||||||| ||| ||| | ||||| ||||||||||    
T  21015486 tcaaaatgtgaaattgcaaagtgggtttgagagataagagaaaacaataacttacaaacacacttgaaacgtagaagagacatgaccggtaacctcaaca 21015387  T
Q  186 agatttgtatgatcaattcatgaggcagatac 217  Q
    | ||| | ||||||||||| ||||||||||||    
T  21015386 aaattaggatgatcaattcttgaggcagatac 21015355  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 64 - 218
Target Start/End: Original strand, 21979990 - 21980144
Alignment:
Q  64 agtgtgtgttgtagtggaaaggtcaaaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagt 163  Q
    |||||||||||  | || ||| |||||||| || || |||||||  |||| |||||| ||||  ||||| ||||||||||||||||||||||||   ||     
T  21979990 agtgtgtgttgcggcggcaagatcaaaatgtgaattcgcaaagttgggatgagagatgagagaaaaccaagacttacaaacacacttgaaacgtgagaga 21980089  T
Q  164 gacttcaccggcaacctcaacaagatttgtatgatcaattcatgaggcagataca 218  Q
    ||||| || ||  |||| | || |||||  || |||| |||||||||||||||||    
T  21980090 gactttactggttaccttagcaggatttcgattatcagttcatgaggcagataca 21980144  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 50 - 198
Target Start/End: Complemental strand, 29695898 - 29695750
Alignment:
Q  50 aacacaattctattagtgtgtgttgtagtggaaaggtcaaaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacact 149  Q
    |||| ||||||||| |||||||| |  |||| ||| | |||||| || |||||||||||||| | ||| ||||||| ||||||| |||||||||| || |    
T  29695898 aacataattctattcgtgtgtgtagcggtggtaagttgaaaatgtgaatttgcaaagtgaggttgagatataagagataaccataacttacaaacgcatt 29695799  T
Q  150 tgaaacgtataagtgacttcaccggcaacctcaacaagatttgtatgat 198  Q
    ||||||| ||||| ||||| || || ||||| || | |||||| |||||    
T  29695798 tgaaacgaataagagacttgactggtaaccttaataggatttgaatgat 29695750  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 88 - 205
Target Start/End: Complemental strand, 29687759 - 29687642
Alignment:
Q  88 aaaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaag 187  Q
    |||||| || |||||||||||||| | ||| || ||||  ||||| |||||||||||||||||||| |||||||| |||||||| || ||| | |  | |    
T  29687759 aaaatgagaatttgcaaagtgaggttgagatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcactggtaactttagaagg 29687660  T
Q  188 atttgtatgatcaattca 205  Q
    ||||| ||||||||||||    
T  29687659 atttgaatgatcaattca 29687642  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 215
Target Start/End: Complemental strand, 1812123 - 1812006
Alignment:
Q  98 tttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaagatttgtatga 197  Q
    ||||||||||| ||||  ||||||||||  |||||| |||||||||| || ||| ||||||| ||  ||||||| || ||||||||||| ||||| | ||    
T  1812123 tttgcaaagtggggatttgagataagagaaaaccataacttacaaacccatttggaacgtatgagatacttcactggtaacctcaacaaaatttgaacga 1812024  T
Q  198 tcaattcatgaggcagat 215  Q
    ||| ||| ||||| ||||    
T  1812023 tcagttcctgaggaagat 1812006  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 174
Target Start/End: Original strand, 29712866 - 29712925
Alignment:
Q  115 agagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccgg 174  Q
    |||||||||||  |||||| |||||||||| ||||||||||| ||||| |||||||||||    
T  29712866 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 29712925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 178699 - 178647
Alignment:
Q  116 gagataagagttaaccatgacttacaaacacacttgaaacgtataagtgactt 168  Q
    ||||| |||| |||||| |||||||||||||| |||||||| ||||| |||||    
T  178699 gagatgagagataaccaagacttacaaacacatttgaaacgaataagagactt 178647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 88 - 216
Target Start/End: Complemental strand, 24309885 - 24309757
Alignment:
Q  88 aaaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaag 187  Q
    |||||| || ||||||||||||| ||||||||||||||  |||||| ||||||||||  | |||||||| ||||| ||||| ||||| || || |  |||    
T  24309885 aaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagacttaaccggtaatcttactaag 24309786  T
Q  188 atttgtatgatcaattcatgaggcagata 216  Q
    ||||   |||||||||||| |||||||||    
T  24309785 attttggtgatcaattcatcaggcagata 24309757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 98 - 216
Target Start/End: Complemental strand, 24340112 - 24339994
Alignment:
Q  98 tttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaagatttgtatga 197  Q
    ||||||||||||  |||||||||||| |  |||||||||||||||||| | |||||||| ||||| ||||| ||||| ||||| |  |||||||   |||    
T  24340112 tttgcaaagtgattatcagagataagtgaaaaccatgacttacaaacagatttgaaacgaataagagacttaaccggtaaccttactaagattttggtga 24340013  T
Q  198 tcaattcatgaggcagata 216  Q
    ||||||||| ||| |||||    
T  24340012 tcaattcatcaggaagata 24339994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 98 - 180
Target Start/End: Complemental strand, 24322160 - 24322078
Alignment:
Q  98 tttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacct 180  Q
    ||||||||  ||||||  ||||||||||  ||||| ||||||||||| || |||||||| ||||| ||||||||| |||||||    
T  24322160 tttgcaaaacgaggatttgagataagagaaaaccaagacttacaaacgcatttgaaacgaataagagacttcaccagcaacct 24322078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 216
Target Start/End: Complemental strand, 24415514 - 24415417
Alignment:
Q  119 ataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaagatttgtatgatcaattcatgaggcagata 216  Q
    |||||||  ||||| ||||||| ||| || |||||||| ||||| ||||| ||||| || ||||| | ||||||  |||||||||||| |||||||||    
T  24415514 ataagagaaaaccaagacttacgaacgcatttgaaacgaataagagacttaaccggtaatctcaataggatttgggtgatcaattcatcaggcagata 24415417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 156
Target Start/End: Complemental strand, 24366853 - 24366795
Alignment:
Q  98 tttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacg 156  Q
    |||||||||| |||||  ||||||||||  ||||||||||| |||||||| ||||||||    
T  24366853 tttgcaaagtaaggatttgagataagagaaaaccatgacttgcaaacacatttgaaacg 24366795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 47 - 216
Target Start/End: Complemental strand, 12011 - 11842
Alignment:
Q  47 aagaacacaattctattagtgtgtgttgtagtggaaaggtcaaaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacac 146  Q
    ||||||| ||| |||  ||||||||||| ||  | ||| | |||||| || ||||||||||||  ||||||||||||||  |||||||||||||||||      
T  12011 aagaacagaatcctacgagtgtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgattatcagagataagagaaaaccatgacttacaaacgg 11912  T
Q  147 acttgaaacgtataagtgacttcaccggcaacctcaacaagatttgtatgatcaattcatgaggcagata 216  Q
    | |||||||| ||||| ||||| | ||| ||||| |  |||||||   |||||||||||| ||| |||||    
T  11911 atttgaaacggataagagacttaatcggtaaccttactaagattttggtgatcaattcatcaggaagata 11842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 217
Target Start/End: Complemental strand, 48883429 - 48883361
Alignment:
Q  149 ttgaaacgtataagtgacttcaccggcaacctcaacaagatttgtatgatcaattcatgaggcagatac 217  Q
    |||||||||| ||| ||||||||  | ||||||| ||| ||||| ||||| |||||| |||||||||||    
T  48883429 ttgaaacgtaaaagagacttcacatgtaacctcaccaaaatttgaatgattaattcaagaggcagatac 48883361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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