View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18377_high_8 (Length: 279)
Name: NF18377_high_8
Description: NF18377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18377_high_8 |
 | |
|
| [»] scaffold0643 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 41529738 - 41529474
Alignment:
| Q |
1 |
aaattttgttgttgttgctgtttggtatgaaaagctaaaagttaaaagccataagttgttccaaaagcttccgtagttgattattgggttaaatatgtta |
100 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41529738 |
aaattttgttgttgtttctgtttggaatgaaaagctaaaagttaaaagccataagttgttccaaaagcttccgtagttgattattgggttaaatatgtta |
41529639 |
T |
|
| Q |
101 |
gaatttctttatgactggtgtaggagctgtgtatacatattttctttgattctggaaaatttgagttgaaattgaattgtctagaggtcataagctgtca |
200 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41529638 |
gaatttctttatgaccggtgtagaagctgtgtatacatattttctttgattctggaaaatttgagttgaaattgaattgtctagaggtcataagctgtca |
41529539 |
T |
|
| Q |
201 |
gtaagctgttttgggaattttgccttaaatgactaagttgtggattaacctgctgtataagtggt |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41529538 |
gtaagctgttttgggaattttgccttaaatgactaagttgtggattaacctgctgtataagtggt |
41529474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 37367835 - 37368099
Alignment:
| Q |
1 |
aaattttgttgttgttgctgtttggtatgaaaagctaaaagttaaaagccataagttgttccaaaagcttccgtagttgattattgggttaaatatgtta |
100 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37367835 |
aaattttgtcgttgttgctgtttggaatgaaaagctaaaagttaaaagccataagttgttccaaaagcttccgtagttgattattgggttaaatatgtta |
37367934 |
T |
|
| Q |
101 |
gaatttctttatgactggtgtaggagctgtgtatacatattttctttgattctggaaaatttgagttgaaattgaattgtctagaggtcataagctgtca |
200 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37367935 |
gaatttatttattactggtgtaggagctgtgtatacatattttatttgattctggaaaatttgagttgaaattgaattgtctagaggtcataagctgtca |
37368034 |
T |
|
| Q |
201 |
gtaagctgttttgggaattttgccttaaatgactaagttgtggattaacctgctgtataagtggt |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
37368035 |
gtaagctgttttgggaattttgccttaaatgactaagttgtggattaaccttctgtataagtggt |
37368099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 2 - 265
Target Start/End: Original strand, 2695960 - 2696215
Alignment:
| Q |
2 |
aattttgttgttgttgctgtttggtatgaaaagctaaaagttaaaagccataagttgttccaaaagcttccgtagttgattattgggttaaatatgttag |
101 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
2695960 |
aattttgttgttgttgctgtttggaatgaaaagctagaagttaaaagccataagttgttccaaaagcttccgtt--------ttgagttaaatatgttag |
2696051 |
T |
|
| Q |
102 |
aatttctttatgactggtgtaggagctgtgtatacatattttctttgattctggaaaatttgagttgaaattgaattgtctagaggtcataagctgtcag |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2696052 |
aatttctttatgactggtgtaggagctgtgtatacatattttctttgattctggaaaatttgagttgaaattgaattgtctagaggtcataagctgtcag |
2696151 |
T |
|
| Q |
202 |
taagctgttttgggaattttgccttaaatgactaagttgtggattaacctgctgtataagtggt |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2696152 |
taagctgttttgggaattttgccttaaatgactaagttgtggattaacctgctgtataagtggt |
2696215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 9 - 263
Target Start/End: Complemental strand, 31316241 - 31315985
Alignment:
| Q |
9 |
ttgttgttgctgtttggtatgaaaagctaaaagttaaaagccataagttgttccaaaagcttccgtagttgattattgggttaaatat-gttagaatttc |
107 |
Q |
| |
|
||||||||||||||||| | ||||||||| | | |||||| ||||||||||||||||||||| | ||||| ||| |||| | ||||| ||||| ||| |
|
|
| T |
31316241 |
ttgttgttgctgtttggaaagaaaagctagaggctaaaagtcataagttgttccaaaagctttcatagttaatttttggaattaatattgttaggattgg |
31316142 |
T |
|
| Q |
108 |
tttatgactggtgtaggagctgtgtatacatattttctttgattctggaaaatttgagttgaaattgaattgtctagaggtcataagctgtcag-taagc |
206 |
Q |
| |
|
| || | ||| |||||||||||||||||| |||| |||||||||||||||||||| ||||||| ||||||| |||||||||||| ||||||| ||||| |
|
|
| T |
31316141 |
tgtagaaatggattaggagctgtgtatacatgttttatttgattctggaaaatttgaattgaaatggaattgtttagaggtcataaactgtcagttaagc |
31316042 |
T |
|
| Q |
207 |
tgttttgggaattttgccttaaatgactaagttgtggattaacctgctgtataagtg |
263 |
Q |
| |
|
|||| ||||||||||| |||||||||||||| ||| |||||| ||||||| ||||| |
|
|
| T |
31316041 |
tgttatgggaattttgtcttaaatgactaagctgttgattaatttgctgtaaaagtg |
31315985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 2 - 210
Target Start/End: Original strand, 31330778 - 31330988
Alignment:
| Q |
2 |
aattttgttgttgttgctgtttggtatgaaaagctaaaagttaaaagccataagttgttccaaaagcttccgtagttgattattgggttaaat-atgtta |
100 |
Q |
| |
|
||||||| ||||||||||||| || ||||||||||| ||||||||| |||||||||||||||||||| | | |||||||||| |||||| | |||| |
|
|
| T |
31330778 |
aattttgctgttgttgctgttcggaatgaaaagctagcagttaaaagtcataagttgttccaaaagctatcagaattgattattgagttaaaacaagtta |
31330877 |
T |
|
| Q |
101 |
gaatttctttatgactggtgtaggagctgtgtatacatattttctttgattctggaaaatttgagttgaaattgaattgtctagaggtcataagctgtca |
200 |
Q |
| |
|
||||||| ||| | || |||||| |||||| |||| ||| ||||||||||||||||||||| ||||||| ||||||| || |||||||||||||||| |
|
|
| T |
31330878 |
gaatttcaatataagtgtcttaggagatgtgtaaacatgtttgctttgattctggaaaatttgaattgaaatggaattgtttaaaggtcataagctgtca |
31330977 |
T |
|
| Q |
201 |
g-taagctgtt |
210 |
Q |
| |
|
| ||||||||| |
|
|
| T |
31330978 |
gttaagctgtt |
31330988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 2 - 210
Target Start/End: Original strand, 31337499 - 31337709
Alignment:
| Q |
2 |
aattttgttgttgttgctgtttggtatgaaaagctaaaagttaaaagccataagttgttccaaaagcttccgtagttgattattgggttaaat-atgtta |
100 |
Q |
| |
|
||||||| ||||||||||||| || ||||||||||| ||||||||| |||||||||||||||||||| | | |||||||||| |||||| | |||| |
|
|
| T |
31337499 |
aattttgctgttgttgctgttcggaatgaaaagctagcagttaaaagtcataagttgttccaaaagctatcagaattgattattgagttaaaacaagtta |
31337598 |
T |
|
| Q |
101 |
gaatttctttatgactggtgtaggagctgtgtatacatattttctttgattctggaaaatttgagttgaaattgaattgtctagaggtcataagctgtca |
200 |
Q |
| |
|
||||||| ||| | || |||||| |||||| |||| ||| ||||||||||||||||||||| ||||||| ||||||| || |||||||||||||||| |
|
|
| T |
31337599 |
gaatttcaatataagtgtcttaggagatgtgtaaacatgtttgctttgattctggaaaatttgaattgaaatggaattgtttaaaggtcataagctgtca |
31337698 |
T |
|
| Q |
201 |
g-taagctgtt |
210 |
Q |
| |
|
| ||||||||| |
|
|
| T |
31337699 |
gttaagctgtt |
31337709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 121 - 265
Target Start/End: Original strand, 2742403 - 2742548
Alignment:
| Q |
121 |
taggagctgtgtatacatattttctttgattctggaaaatttgagttgaaattgaattgtctagaggtcataagctgtcag-taagctgttttgggaatt |
219 |
Q |
| |
|
|||||| | ||||||||| |||||||||||||||||||||| || | ||||||||||||| |||||| ||||||||||||| |||| ||||||| | | |
|
|
| T |
2742403 |
taggagatatgtatacatgttttctttgattctggaaaattagaatagaaattgaattgtttagagggcataagctgtcagttaagttgttttgagcaaa |
2742502 |
T |
|
| Q |
220 |
ttgccttaaatgactaagttgtggattaacctgctgtataagtggt |
265 |
Q |
| |
|
|| |||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
2742503 |
atgtcttaaatgactaagttgtggtttaagctgctgtataagtggt |
2742548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 5559109 - 5558852
Alignment:
| Q |
1 |
aaattttgttgttgttgctgtttggtatgaaaagctaaaagttaaaagccataagttgttccaaaagcttccgtagttgattattgggttaaatatgtta |
100 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5559109 |
aaattttgttgttgtttctgtttggaatgaaaagctaaaag-------ccataagttgttccaaaagcttccgtagttgattattgggttaaatatgtta |
5559017 |
T |
|
| Q |
101 |
gaatttctttatgactggtgtaggagctgtgtatacatattttctttgattctggaaaatttgagttgaaattgaattgtctagaggtcataagctgtca |
200 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5559016 |
gaatttctttatgaccggtgtagaagctgtgtatacatattttctttgattctggaaaattcgagttgaaattgaattgtctagaggtcataagctgtca |
5558917 |
T |
|
| Q |
201 |
gtaagctgttttgggaattttgccttaaatgactaagttgtggattaacctgctgtataagtggt |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5558916 |
gtaagctgttttgggaattttgccttaaatgactaagttgtggactaacctgctgtataagtggt |
5558852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 48 - 260
Target Start/End: Original strand, 34150117 - 34150330
Alignment:
| Q |
48 |
gccataagttgttccaaaagcttccgtagttgattattgggttaaatatgttagaatttctttatgactggtgtaggagctgtgtatacatattttcttt |
147 |
Q |
| |
|
|||||||||||||||||||||| || | |||||||||| |||||| |||||||||| ||| |||| || | |||||||||| ||||||| |||||||| |
|
|
| T |
34150117 |
gccataagttgttccaaaagctaccagaattgattattgagttaaacatgttagaatatctgtatgggtgatttaggagctgtttatacatgttttcttt |
34150216 |
T |
|
| Q |
148 |
gattctggaaaatttgagttgaaattgaattgtctagaggtcataagctgtcag-taagctgttttgggaattttgccttaaatgactaagttgtggatt |
246 |
Q |
| |
|
| ||||||||||||||| ||||||||||||| ||||||| |||||||||||||| |||||| ||||| |||||||| ||||||| |||||||| |||||| |
|
|
| T |
34150217 |
gtttctggaaaatttgaattgaaattgaattttctagagatcataagctgtcagttaagcttttttgcgaattttgacttaaattactaagttatggatt |
34150316 |
T |
|
| Q |
247 |
aacctgctgtataa |
260 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
34150317 |
aatctgctgtataa |
34150330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 6 - 242
Target Start/End: Original strand, 25637330 - 25637566
Alignment:
| Q |
6 |
ttgttgttgttgctgtttggtatgaaaagctaaaagttaaaagccataagttgttccaaaagcttccgtagttgattattgggttaaatatgttagaatt |
105 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||| |||||||||||||||||| ||||||||| |||| ||||| |||| | || |||||||||| |
|
|
| T |
25637330 |
ttgttgttgttgctgtttggaatgaaaagctagaagctaaaagccataagttgtttcaaaagctttcgtaactgatttttggaatcaacgtgttagaatt |
25637429 |
T |
|
| Q |
106 |
tctttatgactggtgtaggagctgtgtatacatattttctttgattctggaaaatttgagttgaaattgaattgtctagaggtcataagctgtcag-taa |
204 |
Q |
| |
|
|| || | ||| |||||||||| ||||||| | | |||| ||||||||||||||| ||||||||||||| ||| || ||||| |||||| ||| |
|
|
| T |
25637430 |
gctgtagggatgggttaggagctgtatatacatgtatggtttgcttctggaaaatttgaacagaaattgaattgtttagtgggtataagttgtcagttaa |
25637529 |
T |
|
| Q |
205 |
gctgttttgggaattttgccttaaatgactaagttgtg |
242 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
25637530 |
gctgttttgagaa-aatgccttaaatgactaagttgtg |
25637566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 38 - 260
Target Start/End: Original strand, 17054158 - 17054380
Alignment:
| Q |
38 |
aaagttaaaagccataagttgttccaaaagcttccgtagttgattattgggttaaatatgttagaatttctttatgactggtgtaggagctgtgtataca |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
17054158 |
aaagttaaaagccataagttgttccaaaagcttccgcagttgattattgggttaaatatgttataatttctttatgactggtgtaggaactgtgtataca |
17054257 |
T |
|
| Q |
138 |
tattttctttgattctggaaaatttgagttgaaattgaattgtctagaggtcataagctgtcagtaagctgttttgggaattttgccttaaatgactaag |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17054258 |
tattttctttgattctggaaaatttgagttgaaattgaattgtctagaggtcataagctgtcagtaagctgttttgggaattttgccttaaatgactaag |
17054357 |
T |
|
| Q |
238 |
ttgtggattaacctgctgtataa |
260 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
17054358 |
ttgtggattaacctgctgtataa |
17054380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 6 - 263
Target Start/End: Complemental strand, 18112691 - 18112432
Alignment:
| Q |
6 |
ttgttgttgttgctgtttggtatgaaaagctaaaagttaaaagccataagttgttccaaaagcttccgtagttgattattgggttaaatat-gttagaat |
104 |
Q |
| |
|
|||||||||||| ||||||| | ||||||||| | |||||| ||||||||||||||||||||| | ||||||||| |||| | ||||| ||||| || |
|
|
| T |
18112691 |
ttgttgttgttgttgtttggaaagaaaagctagagtctaaaagtcataagttgttccaaaagctttcatagttgatttttggaattaatattgttaggat |
18112592 |
T |
|
| Q |
105 |
ttctttatgactggtgtaggagctgtgtatacatattttctttgattctggaaaatttgagttgaaattgaattgtctagaggtcataagctgtcag-ta |
203 |
Q |
| |
|
| | || | ||| |||||||||||||||||| |||| |||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||| || |
|
|
| T |
18112591 |
tggtgtagaaatggattaggagctgtgtatacatgttttatttgattctggaaaatttgaattgaaatggaattgtttagaggtcataagctgtcagtta |
18112492 |
T |
|
| Q |
204 |
agctgttttgggaattttgccttaaatgactaagttgtggattaacctgctgtataagtg |
263 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||| |||||| ||||||| ||||| |
|
|
| T |
18112491 |
agctgttatgggaattttgtcttaaatgactaagttgttgattaatttgctgtaaaagtg |
18112432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 6 - 265
Target Start/End: Original strand, 33295098 - 33295357
Alignment:
| Q |
6 |
ttgttgttgttgctgtttggtatgaaaagctaaaagttaaaagccataagttgttccaaaagcttccgtagttgattattgggttaaatatgttagaatt |
105 |
Q |
| |
|
||||||||||||||||||| ||||||||||| || |||||| |||||||||||||||||||||| || |||||||||| |||||||||||||||||| |
|
|
| T |
33295098 |
ttgttgttgttgctgtttgaaatgaaaagctagaacctaaaagtcataagttgttccaaaagcttcaatatttgattattgagttaaatatgttagaatt |
33295197 |
T |
|
| Q |
106 |
tctttatgactggtgtaggagctgtgtatacatattttctttgattctggaaaatttgagttgaaattgaattgtctagaggtcataagctgtcagtaag |
205 |
Q |
| |
|
||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33295198 |
tctgtaagactggtgtaggagctgtgtatacatattttctttgattctggaaaatttgagttgaaattgaattgtctagaggtcataagctgtcagtaag |
33295297 |
T |
|
| Q |
206 |
ctgttttgggaattttgccttaaatgactaagttgtggattaacctgctgtataagtggt |
265 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
33295298 |
ctgttttgggaattttgccttaaataactaagttgttgattaacctgctgtataagtggt |
33295357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 6 - 265
Target Start/End: Complemental strand, 8520797 - 8520537
Alignment:
| Q |
6 |
ttgttgttgttgctgtttggtatgaaaagctaaaagttaaaagccataagttgttccaaaagcttccgtagttgattattgggttaaatatgttagaatt |
105 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||| |||||| || |||||||||| ||| ||||| || |||||||||| ||| |||||||||||||| |
|
|
| T |
8520797 |
ttgttgttgttgctgtttgaaatgaaaagctagaagctaaaagtcaaaagttgttccgaaaacttccatatttgattattgagtttaatatgttagaatt |
8520698 |
T |
|
| Q |
106 |
tctttatgactggtgtaggagctgtgtatacatattttctttgattctggaaaatttgagttgaaattgaattgtctagaggtcataagctgtcag-taa |
204 |
Q |
| |
|
||| || |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
8520697 |
tctgtaagactggtgtaggagatgtgtgtacatattttctttgattctggaaaatttgagttgaaatttaattgtctagaggtcataagctgtcagttaa |
8520598 |
T |
|
| Q |
205 |
gctgttttgggaattttgccttaaatgactaagttgtggattaacctgctgtataagtggt |
265 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
8520597 |
gctgttttgcaaattttgccttaaatgactatgttgtggattaacctgctgtataagtggt |
8520537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 121 - 265
Target Start/End: Original strand, 29933631 - 29933776
Alignment:
| Q |
121 |
taggagctgtgtatacatattttctttgattctggaaaatttgagttgaaattgaattgtctagaggtcataagctgtc-agtaagctgttttgggaatt |
219 |
Q |
| |
|
|||||| | ||||||||| |||||||||||||||||||||| || | ||||||||||||| |||||| ||||||||||| | |||||||||||| | | |
|
|
| T |
29933631 |
taggagatatgtatacatgttttctttgattctggaaaattagaatagaaattgaattgtttagagggcataagctgtcaattaagctgttttgagcaaa |
29933730 |
T |
|
| Q |
220 |
ttgccttaaatgactaagttgtggattaacctgctgtataagtggt |
265 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
29933731 |
atgccttaaatgactaagttgtggtttaagctgctgtataagtggt |
29933776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 48 - 202
Target Start/End: Original strand, 5248828 - 5248982
Alignment:
| Q |
48 |
gccataagttgttccaaaagcttccgtagttgattattgggttaaatatgttagaatttctttatgactggtgtaggagctgtgtatacatattttcttt |
147 |
Q |
| |
|
||||||||||||||| |||||| || ||||||||||||| |||||| |||||||||| ||| || | |||| ||| || |||||| |||| ||| || |
|
|
| T |
5248828 |
gccataagttgttcctaaagctaccatagttgattattgagttaaacatgttagaatctctgtacaattggtttagaaggtgtgtaaacatgtttgggtt |
5248927 |
T |
|
| Q |
148 |
gattctggaaaatttgagttgaaattgaattgtctagaggtcataagctgtcagt |
202 |
Q |
| |
|
| ||||||||| ||| | | |||||||||||| |||||| |||||||||||||| |
|
|
| T |
5248928 |
gcttctggaaatttttaataaaaattgaattgtttagagggcataagctgtcagt |
5248982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0643 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0643
Description:
Target: scaffold0643; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 38 - 260
Target Start/End: Original strand, 7260 - 7480
Alignment:
| Q |
38 |
aaagttaaaagccataagttgttccaaaagcttccgtagttgattattgggttaaatatgttagaatttctttatgactggtgtaggagctgtgtataca |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||| |
|
|
| T |
7260 |
aaagttaaaagccataagttgttccaaaagcttccgcagttgattattgggttaaatatgttagaatttcttt--gattggtgtaggaactgtgtataca |
7357 |
T |
|
| Q |
138 |
tattttctttgattctggaaaatttgagttgaaattgaattgtctagaggtcataagctgtcagtaagctgttttgggaattttgccttaaatgactaag |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7358 |
tattttctttgattctggaaaatttgagttgaaattgaattgtctagaggtcataagctgttagtaagctgttttgggaattttgccttaaatgactaag |
7457 |
T |
|
| Q |
238 |
ttgtggattaacctgctgtataa |
260 |
Q |
| |
|
||||||||||| ||||||||||| |
|
|
| T |
7458 |
ttgtggattaatctgctgtataa |
7480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 38 - 248
Target Start/End: Complemental strand, 9142957 - 9142747
Alignment:
| Q |
38 |
aaagttaaaagccataagttgttccaaaagcttccgtagttgattattgggttaaatatgttagaatttctttatgactggtgtaggagctgtgtataca |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
9142957 |
aaagttaaaagccataagttgttccaaaagcttccgcggttgattattaggttaaatatgttagaatttctttatgactggtgtaggaactgtgtataca |
9142858 |
T |
|
| Q |
138 |
tattttctttgattctggaaaatttgagttgaaattgaattgtctagaggtcataagctgtcagtaagctgttttgggaattttgccttaaatgactaag |
237 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
9142857 |
tattttctttgattttggaaaatttgagttgaaattgaattgcctagaggtcataagctgtcagtgagttgttttgggaattttgccttaaatgactaag |
9142758 |
T |
|
| Q |
238 |
ttgtggattaa |
248 |
Q |
| |
|
||||||||||| |
|
|
| T |
9142757 |
ttgtggattaa |
9142747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 121 - 263
Target Start/End: Complemental strand, 4853738 - 4853595
Alignment:
| Q |
121 |
taggagctgtgtatacatattttctttgattctggaaaatttgagttgaaattgaattgtctagaggtcataagctgtcag-taagctgttttgggaatt |
219 |
Q |
| |
|
|||||| | ||||||||| |||||||||||||||||||||| || | ||||||||||||| |||||| ||||||||||||| ||||||||||| | | |
|
|
| T |
4853738 |
taggagatatgtatacatgttttctttgattctggaaaattagaatagaaattgaattgtttagagggcataagctgtcagttaagctgttttaagtaaa |
4853639 |
T |
|
| Q |
220 |
ttgccttaaatgactaagttgtggattaacctgctgtataagtg |
263 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
4853638 |
atgccttaaatgactaagttgtggtttacactgctgtataagtg |
4853595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 204 - 263
Target Start/End: Original strand, 15028261 - 15028320
Alignment:
| Q |
204 |
agctgttttgggaattttgccttaaatgactaagttgtggattaacctgctgtataagtg |
263 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
15028261 |
agctgttttgggaattttgccttaaatgactaagttgtggattaagctgctgtataagtg |
15028320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 150 - 264
Target Start/End: Complemental strand, 5600724 - 5600608
Alignment:
| Q |
150 |
ttctggaaaatttgagttgaaattgaattgtctagaggtcataagctgtcag-taagctgttttgggaattttgccttaaatgactaagttgtgga-tta |
247 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||| ||||| |||||| |||||||||||| ||| ||||||||| |||||||||||| | ||| |
|
|
| T |
5600724 |
ttctggaaaatttgagcagaaattgaattgtttagagggcataacttgtcagttaagctgttttgagaaaaatgccttaaaagactaagttgtgaattta |
5600625 |
T |
|
| Q |
248 |
acctgctgtataagtgg |
264 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
5600624 |
aactgctgtataagtgg |
5600608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 6734280 - 6734346
Alignment:
| Q |
6 |
ttgttgttgttgctgtttggtatgaaaagctaaaagttaaaagccataagttgttccaaaagcttcc |
72 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||| ||| |||||| ||||||||||||||||||||||| |
|
|
| T |
6734280 |
ttgttgttgttgttgtttggaatgaaaagctagaagctaaaagtcataagttgttccaaaagcttcc |
6734346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 167 - 242
Target Start/End: Original strand, 6734429 - 6734505
Alignment:
| Q |
167 |
tgaaattgaattgtctagaggtcataagctgtcag-taagctgttttgggaattttgccttaaatgactaagttgtg |
242 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||| |||||||||||| | | ||||||||||||| |||||||| |
|
|
| T |
6734429 |
tgaaattgaattgtttagaggtcataagttgtcagttaagctgttttgagcaaaatgccttaaatgacaaagttgtg |
6734505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 180
Target Start/End: Complemental strand, 28023271 - 28023212
Alignment:
| Q |
121 |
taggagctgtgtatacatattttctttgattctggaaaatttgagttgaaattgaattgt |
180 |
Q |
| |
|
|||||| | ||||||||| |||||||||||||||||||||| || | ||||||||||||| |
|
|
| T |
28023271 |
taggagatatgtatacatgttttctttgattctggaaaattagaatagaaattgaattgt |
28023212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 6 - 242
Target Start/End: Complemental strand, 4342596 - 4342359
Alignment:
| Q |
6 |
ttgttgttgttgctgtttggtatgaaaagctaaaagttaaaagccataagttgttccaaaagcttccgtagttgattattgggttaaatatgttagaatt |
105 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||| |||||||||||||||||| ||||||||| |||| ||||| |||| | || |||||||||| |
|
|
| T |
4342596 |
ttgttgttgttgctgtttggaatgaaaagctagaagctaaaagccataagttgtttcaaaagctttcgtaactgatttttggaatgaacgtgttagaatt |
4342497 |
T |
|
| Q |
106 |
tctttatgactggtgtaggagctgtgtatacatattttctttgattctggaaaatttgagttgaaattgaattgtctagaggtcataagctgtcag-taa |
204 |
Q |
| |
|
|| || | ||| |||||||||||||||||| | | |||| ||||||||||||||| ||||||||||||| |||||| ||||| |||||| ||| |
|
|
| T |
4342496 |
gctgtagggatgggttaggagctgtgtatacatgtatggtttgcttctggaaaatttgaacagaaattgaattgtttagagggtataagttgtcagttaa |
4342397 |
T |
|
| Q |
205 |
gctgttttgggaattttgccttaaatgactaagttgtg |
242 |
Q |
| |
|
|||||||| | | |||||||||||||||||||||| |
|
|
| T |
4342396 |
gctgttttaagcaaaatgccttaaatgactaagttgtg |
4342359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 116 - 263
Target Start/End: Original strand, 34455432 - 34455580
Alignment:
| Q |
116 |
tggtgtaggagctgtgtatacatattttctttgattctggaaaatttgagttgaaattgaattgtctagaggtcataagctgtcag-taagctgttttgg |
214 |
Q |
| |
|
|||| |||||| |||||||| || ||| |||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||| ||||||||| ||| |
|
|
| T |
34455432 |
tggtctaggagatgtgtatatatgtttagtttgattctggaaaatttgaattgaaatggaattgtttagaggtcataagctgtcagttaagctgttatgg |
34455531 |
T |
|
| Q |
215 |
gaattttgccttaaatgactaagttgtggattaacctgctgtataagtg |
263 |
Q |
| |
|
||||||| |||||||||||||| ||| ||| || ||||||| ||||| |
|
|
| T |
34455532 |
aaattttgtcttaaatgactaagctgttgatcaatttgctgtaaaagtg |
34455580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 4 - 246
Target Start/End: Original strand, 3077569 - 3077812
Alignment:
| Q |
4 |
ttttgttgttgttgctgtttggtatgaaaagctaaaagttaaaagccataagttgttcc-aaaagcttccgtagttgattattgggttaaatatgttaga |
102 |
Q |
| |
|
||||| |||||||||||||||| |||| |||||| ||||||||||||||||||||| || ||||||| | || |||||| ||||| ||| | || ||| |
|
|
| T |
3077569 |
ttttgctgttgttgctgtttggaatgagaagctagaagttaaaagccataagttgtcccaaaaagctatcataagtgattaatgggtgaaacaagtaaga |
3077668 |
T |
|
| Q |
103 |
atttctttatgactggtgtaggagctgtgtatacatattttctttgattctggaaaatttgagttgaaattgaattgtctagaggtcataagctgtcag- |
201 |
Q |
| |
|
||||| ||| | || | ||||| |||||| |||| ||| |||| ||||||||||||||| |||||||||| || |||||| ||||||||| || |
|
|
| T |
3077669 |
atttcggtataagtgat-taggatttgtgtaaacatgtttggtttgcttctggaaaatttgaacagaaattgaatggtttagagggtataagctgttagt |
3077767 |
T |
|
| Q |
202 |
taagctgttttgggaattttgccttaaatgactaagttgtggatt |
246 |
Q |
| |
|
||||||||||| ||| |||||||||||| ||||||||||||| |
|
|
| T |
3077768 |
taagctgtttttagaaaaatgccttaaatgattaagttgtggatt |
3077812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 150 - 264
Target Start/End: Original strand, 42784842 - 42784958
Alignment:
| Q |
150 |
ttctggaaaatttgagttgaaattgaattgtctagaggtcataagctgtcag-taagctgttttgggaattttgccttaaatgactaagttgtgga-tta |
247 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||| ||||| |||||| |||||||||||| ||| ||||||||| |||||||||||| | ||| |
|
|
| T |
42784842 |
ttctggaaaatttgagcagaaattgaattgtttagagggcataaattgtcagttaagctgttttgagaaaaatgccttaaaagactaagttgtgaattta |
42784941 |
T |
|
| Q |
248 |
acctgctgtataagtgg |
264 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
42784942 |
aactgctgtataagtgg |
42784958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 150 - 264
Target Start/End: Complemental strand, 48479083 - 48478967
Alignment:
| Q |
150 |
ttctggaaaatttgagttgaaattgaattgtctagaggtcataagctgtcag-taagctgttttgggaattttgccttaaatgactaagttgtgga-tta |
247 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||| ||||| |||||| |||||||||||| ||| ||||||||| |||||||||||| | ||| |
|
|
| T |
48479083 |
ttctggaaaatttgagcagaaattgaattgtttagagggcataacttgtcagttaagctgttttgagaaaaatgccttaaaagactaagttgtgaattta |
48478984 |
T |
|
| Q |
248 |
acctgctgtataagtgg |
264 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
48478983 |
aactgctgtataagtgg |
48478967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 6 - 265
Target Start/End: Original strand, 44192829 - 44193098
Alignment:
| Q |
6 |
ttgttgttgttgctgtttggtatgaaaagctaaaagtta-------aaagccataagttgttccaaaagcttccgtagttgattattgg--gttaaatat |
96 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||| || |||||||||||||||||||||||||||| || | |||| || | ||||| || |
|
|
| T |
44192829 |
ttgttgttgttgctgtttggaatgaaaagctagaagctagaagctaaaagccataagttgttccaaaagcttccataatcgattttttgaagttaac-at |
44192927 |
T |
|
| Q |
97 |
gttagaatttctttatgactggtgtaggagctgtgtatacatattttctttgattctggaaaatttgagttgaaattgaattgtctagaggtcataagct |
196 |
Q |
| |
|
|| || ||| || || | ||| ||||| |||| ||||||| | || ||||| |||||||||||||| ||||||||||| ||| ||||||||||||| | |
|
|
| T |
44192928 |
gtaaggattgctgtaaaaatgggttaggatctgtttatacatgtattatttgactctggaaaatttgaattgaaattgaactgtttagaggtcataagtt |
44193027 |
T |
|
| Q |
197 |
gtcag-taagctgttttgggaattttgccttaaatgactaagttgtgga-ttaacctgctgtataagtggt |
265 |
Q |
| |
|
|| || |||||||||||| ||| |||||||||||||||||||||| | |||| ||||||||||||||| |
|
|
| T |
44193028 |
gttagttaagctgttttgagaaaaatgccttaaatgactaagttgtgaatttaaaatgctgtataagtggt |
44193098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 121 - 198
Target Start/End: Original strand, 14113687 - 14113764
Alignment:
| Q |
121 |
taggagctgtgtatacatattttctttgattctggaaaatttgagttgaaattgaattgtctagaggtcataagctgt |
198 |
Q |
| |
|
|||||| | ||||||||| ||| ||||||||||||||||||||| | ||||||||||||| |||||| |||||||||| |
|
|
| T |
14113687 |
taggagatatgtatacatgtttgctttgattctggaaaatttgaatagaaattgaattgtttagagggcataagctgt |
14113764 |
T |
|
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